Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00485 ATGTCTTCCGACCAACCTCGTGGTAGAAACAATAGCGCCAGAAGGACTTATCACCTCTACTGGTGCAACCAATGCCGTCGCACTGTCAGCATCGTAGCTGGAGATCTTTCTGAGATTGCTTGCCCTCGGTGTTATGGTCAGTTTCTTGATGAAATCAACGGACAGAATCCCAGGCTCCTTTTCACTTATATCGATCTCGATCCCTTTCCGGAATCTCGTTTACTCGAAGCCCTCTCTCTGTCTCTGAATCCACCAGTGCTTGGCTTTCGTAACCGTCTGGATGACTCTGACCTCCACTTTCTCCATCGGCGTCCTCAACGACGGCGATACGACGATGTGTACGAAATAAACTTTCAGAGCCTTGTAGAGGGTGAGAATCCGGGCCGTCAACGCACTCGTCGGCGATATCGTAGTTCGGATGGGAGGGAAAATCCAATCTTAGGAAGAGGAAGCCAAGGTCATCCTTCGAGTTTGGTCATTCCAATACCCACTCGCCCCCTCGTTCCCCCTGGAGTTGATCCGAGAAACTACTTTTTAGGGCCAGGATTGAACGAACTGATAGAAGAGCTGACTGAGAACGACCGGCCGGGGCGGCCTCCGGCGCCGGATGCTGCGATAAACGCTATACCATGGGTGAAAATCGAGAAGGAGCATTTAACGAAGAACGAGCCGCATTGCCCCGTTTGCATGGAAGAGTTTGAGGTGGGAGGGGAAGTGAGAGAGCTGCCGTGCAAGCACATCTACCACTCCGACTGTATAATCCCTTGGCTCCAGCTTCACAATTCTTGCCCCGTTTGCCGCCACGAGATCTCGGCCCCACCGGAGACCGAAGTTGCAGGGAGCGACAACGACAGAAGAGAGCGAGGCCGTCGCCAAGGGTCGAGGTGGAGACAGTTGGGCTCTATCTGGCCATTCCGACCAAGAATCCAACAAACTGACCCTCCGACCACTGCTTCAGGTAATGAGCTTTTGACATTCATGGTCTCTTCTTTAAGTACATAA 1002 52.5 MSSDQPRGRNNSARRTYHLYWCNQCRRTVSIVAGDLSEIACPRCYGQFLDEINGQNPRLLFTYIDLDPFPESRLLEALSLSLNPPVLGFRNRLDDSDLHFLHRRPQRRRYDDVYEINFQSLVEGENPGRQRTRRRYRSSDGRENPILGRGSQGHPSSLVIPIPTRPLVPPGVDPRNYFLGPGLNELIEELTENDRPGRPPAPDAAINAIPWVKIEKEHLTKNEPHCPVCMEEFEVGGEVRELPCKHIYHSDCIIPWLQLHNSCPVCRHEISAPPETEVAGSDNDRRERGRRQGSRWRQLGSIWPFRPRIQQTDPPTTASGNELLTFMVSSLST 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3056688 3057689 + Bpe015169.1 Bpe04g00485 102294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00485 333 SMART ring_2 226 266 IPR001841 -
Bpe04g00485 333 MobiDBLite consensus disorder prediction 279 294 - -
Bpe04g00485 333 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Bpe04g00485 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 65 - -
Bpe04g00485 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 163 279 - -
Bpe04g00485 333 SUPERFAMILY RING/U-box 206 274 - -
Bpe04g00485 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 273 IPR013083 -
Bpe04g00485 333 MobiDBLite consensus disorder prediction 274 295 - -
Bpe04g00485 333 PANTHER - 163 279 - -
Bpe04g00485 333 PANTHER - 9 65 - -
Bpe04g00485 333 MobiDBLite consensus disorder prediction 124 159 - -
Bpe04g00485 333 CDD RING-H2_RNF126_like 226 267 - -
Bpe04g00485 333 MobiDBLite consensus disorder prediction 127 142 - -
Bpe04g00485 333 Pfam Ring finger domain 225 267 IPR001841 -
Bpe04g00485 333 Pfam zinc-ribbon 20 52 IPR039525 GO:0061630
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00485 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - qsu:112032941 272.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00485 Bpe-Chr4:3056688 Bpe12g00631 Bpe-Chr12:11956125 4.75E-44 dispersed
Bpe04g00485 Bpe-Chr4:3056688 Bpe04g00494 Bpe-Chr4:3115841 2.67E-38 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g291 . Blo12g00673 . Bda03g00531 . Bpe04g00485 . . . . . Cma09g00804 . . . Cpe06g00639 . . . . . . . . . . . . . . . Cone4ag1390 . . . Lsi04g02380 Csa04g01892 . . . . . . . . . . . . Cmo09g00797 . . . Car09g00720 . . Bhi09g02658 . . . Hepe01g2273 Mch11g0820 . Cla11g01527 . . . . . . . . Chy07g00659 Cme07g00866
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007071 1 5 1 0 1 0 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00485 Bpe_Chr04 FPKM 17.848341 22.200048 40.742554 38.54641 18.975264 16.140495 17.509106 61.452152 57.486088 61.075691