Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00488 ATGGATGATCCAGCGGATCTTGATTCCGTCGAGATGTCCCGGCCAAGCGTTCGTCGGAAATTGATCCAAGCGACGATAATCCCTCATAAACCCCAGGAATGCCGTGTTGATGACGGACTTGACGACGAGAAGGACAGCGGCAGTGAAGGGGAGTGCCGCGAGACGGAAATAAAGAGAAGGAAGAAAAGGACTCCAGCTAAGACGACGTCTCGCAAAGGAGTTTTAAAGAAGCCGAAGAATTCAAAAGAGAAGCCGTCTGTTAACTTGACGCCAAAAAAAAATGAAGTAACTGACAATGAAAGAGTATCTCCATCAATTCCTAATTTGCGGTTGGAAGCGAAAATGTCGGCAGAGGAAACTTCACGGATATTTGCAGGAAGAGAGTTACATCCATTTTTCTCAATTAGGAGAGGAAGTAAGAAATCTCAGGACACACCTGCTCTGGCTTATAATTCATGTTCCGTTGAGAGACAGAACAGAGTAATAAATTGTGGTCCAATCCACGTGCTTGAGAGAACCGAGGATGATATCACGCCTCTTGACTGGAGACATTGGATATTTTGCGAGTCTGTGTTCAGCAGACAATATGATTTAAAATGCTCTAGGGAATCCTTTTTTGAAGGCTCTGTGGAGCCTCTAAATGTTTGTCAGCTTCCCATTATTACGTATCCTTGTGATGCATTGGCTTTTCAGAAAAATGAATCCTTGGTTCAGCATCTAACGGAGAAAGAAGATGAACATGAGATAGAATCTACAGTGCCATTAATTGTTGTTGATGAGGAGGGGATGCCGAATCATCTTATAGAAGATTCAAAGAACAGCCAGGTGGATAAAGTATGTGACATTTCTAATTCTGAAATGAAGTCAAATACAGAGGAGCAAAGTAGATTTCTTCAGAAAAGGATGAGACACTATCATCATCAGTCCAATGATAGTTTATGGACGTACAAGTATCGTCCAGAGAAGGTCATAGATATATGTGGTAATCAGGAACAAGTTAAATCTTTGAGCGAGTGGCTACAGCTATGGCATGAAAAGAATCTGCAGAATAACAAAGATTTCACCTGTGGAGATGGTGATGATATGGAAGAGAATGACTGTGACTATTCTCGGAGCATCTCTGACTTAGATGGGATAGATGAAGAGGCCACCTTAAAGAATGTTCTTCTAGTCACGGGACCAGCGGGGAGTGGCAAGTCTGCAGCTATATATGCTTGTGCAAAGGAGCAAGGTTTTAGGGTTTTAGAGTTCAGTGCATCTGATCATCGATCTGGAGCTGTTCTCAAGCAGTTGATTGGAGAGACATTACAATCTCATCAGCTGAAATGGGCTCAAGTCAAGGGCTCATCACTGCCTGGAAGCTCAGGAGTCAATGGGTTTGGTAATGGAGTGGTTGAGCTGATTCCTTTGTCAGATGAAGATTCTCAAGATGTCACTGAAATACCGGAAGTTTTTGCAGCAGATCCTGTAACTGTTCGTAATCAAGGTGGAGTAAAGCCTTTAATTCTTCTTGAGGACGTGGATATCGTTTTTCCAGAAGATCGTGGTTTTATTTCTGTCCTACAACATATTTATGAAACAGGAAAAGGGCCCATAATTTTGACAAGCAATGATGACAATCCTCTCCTACCAGACCAATTGAAGCGACTAAAGGTGTCTTTCACGCAGCCTTCACTAAAGGACTTGCTTAGTCACATGCACGTGATTTGTGCTGCTGAGGGAGTCAATGTTAAACCTCAGTTACTGCAGAGATTTATCAAGTGTTGTGAGGGAGATATGCGTAAAATCATCATGCATCTCCAGTTCTGGTGCCAGGATATAATATCGAGAGGAGGTAAGAAAGTGCAGCAAACATATGGTTCACTGTTGTTTGATCTTGATGCTTTTCATCTGATACTACCAACTATAATCCCGTGGAGTTTCCCCTCTGTGTTATCTGAGCTGGTAGAGAAAGAGATCAACAAATCATTGTCCATGACTGAAAAAAATTTTAGCTTAAACGAAGCTAGCCAAGAAGATTCTGACAATAAAAAATCACAGCAAAATGTGGATTTAAGTAAACATAGAAACTTAGAAACCAGAAAGGTAGAAATGCTGAATATGAATGGCTCCATTCACCATGGCCAAGATTTTTTAACTCAATTTGATGATTTTGGTGAGTTTTCTTGTACTTCCAGCAATCCTATTGCTTTCTCCCGAAAATATCCTCGAAGAAAGCTTGATTTGGTGATATCATCTGATTCTGAAGATGATTTAGCCTGTAAGGATTGTTCTTTTGTAGTAGATAAGAGTGCCGATGCCGCTATTGAGCCAGACCTTGAAATCAACGAGAAGTCTCTGTCTCATTTTCTAATATCTAGAAACTGCTTAGACCCATCATCTGATGAGATGCTTTGTGTGAAAGCAGAGCAGATGAATGGAAGTTATTATTCGTTTTCAGAACCAGCTGATGAGGTATGCGAATCAGTTGATAGGTTAGGTGCACCAGAATCATCATTTGTTCCTGAGTCTGTGGATAATAAACCAGGGCTGTTAGCTGGAGCAACATCTTGGAGTCATGTTACTGAAACCATGAACATATCTGTAAACAATGGATTTTCACAGAACCTGTCACCTGTCAGAGTTAATAATCTTGAAGAATGCCTAGGATTTAACAAAACTTCAAATATGGTAGAAAATAGTTCTTTACCTGAGCATTTCAGTATTCGAGGAGAAACTTCTCCATATGGGCCAGGGGAATCTGGTATGAGTGCCTATCAAGTGATGGATGAATGTAGCCGTATGCATTTCAATCAGTCCAAGTTTGCTGAGAAGCATTTATCGAGGGTGACAGCCAATGTAGTGCAAGAATCATGGAAAAGACTACGGATTTGTCATGAAGATCTAAGTCATAACCTCGCCTCAGAAAAACAAGAAGTTTCTCAGATTGTTGAGCTTGCTCAAAGACTTAGCAATCTAATATCTGATTCTGACCTATTATTGTCGTGGTGTCAACCTCAGTGTTTGGATGGAAAGCAGGTGCACTCAACTGGGGAAGTTGACACATTTAATTGGTGTGATGACCAATTGCAGATGGTATCAACGATAGCAAAGCATGGATTTTGTTTCTATGCAAGAGACGTTGCTGCCATAGCATTCACTCTTGATTGTGAGAACAAAATGGATATTGTGTCAGAGATGCTTGGTTCCACTACTGATTCAATGGCATTAGGTAAATTAGTTAGACAAGATATGAAGAAAACTAGGACCTCATCTGCCGGAATTAACTTAGAGAAGAACCAACCACAAAGTGAATTGATCCCAGACAGGGAAAACGAATCTCATCTTGACATAGTCCAGTCAACGGTTCCTCCGAGATTATTTTTGTCAAGTAAAGGTGTTGCATACTTTGATTATCTTTCTTCACTTCGCCATATTTCAAAATCAGAATCCACCAGATTATCACAAGGAGATGATAGGACGAGAAGACAAAGGGGACGAGTGGCTCGACACTACTTAAGCTCTGGTACGCTGATGTTGTCTCCAGAAGATATAAGATTGCTGGACCAACTGAAACTTCCTTAA 3564 40.97 MDDPADLDSVEMSRPSVRRKLIQATIIPHKPQECRVDDGLDDEKDSGSEGECRETEIKRRKKRTPAKTTSRKGVLKKPKNSKEKPSVNLTPKKNEVTDNERVSPSIPNLRLEAKMSAEETSRIFAGRELHPFFSIRRGSKKSQDTPALAYNSCSVERQNRVINCGPIHVLERTEDDITPLDWRHWIFCESVFSRQYDLKCSRESFFEGSVEPLNVCQLPIITYPCDALAFQKNESLVQHLTEKEDEHEIESTVPLIVVDEEGMPNHLIEDSKNSQVDKVCDISNSEMKSNTEEQSRFLQKRMRHYHHQSNDSLWTYKYRPEKVIDICGNQEQVKSLSEWLQLWHEKNLQNNKDFTCGDGDDMEENDCDYSRSISDLDGIDEEATLKNVLLVTGPAGSGKSAAIYACAKEQGFRVLEFSASDHRSGAVLKQLIGETLQSHQLKWAQVKGSSLPGSSGVNGFGNGVVELIPLSDEDSQDVTEIPEVFAADPVTVRNQGGVKPLILLEDVDIVFPEDRGFISVLQHIYETGKGPIILTSNDDNPLLPDQLKRLKVSFTQPSLKDLLSHMHVICAAEGVNVKPQLLQRFIKCCEGDMRKIIMHLQFWCQDIISRGGKKVQQTYGSLLFDLDAFHLILPTIIPWSFPSVLSELVEKEINKSLSMTEKNFSLNEASQEDSDNKKSQQNVDLSKHRNLETRKVEMLNMNGSIHHGQDFLTQFDDFGEFSCTSSNPIAFSRKYPRRKLDLVISSDSEDDLACKDCSFVVDKSADAAIEPDLEINEKSLSHFLISRNCLDPSSDEMLCVKAEQMNGSYYSFSEPADEVCESVDRLGAPESSFVPESVDNKPGLLAGATSWSHVTETMNISVNNGFSQNLSPVRVNNLEECLGFNKTSNMVENSSLPEHFSIRGETSPYGPGESGMSAYQVMDECSRMHFNQSKFAEKHLSRVTANVVQESWKRLRICHEDLSHNLASEKQEVSQIVELAQRLSNLISDSDLLLSWCQPQCLDGKQVHSTGEVDTFNWCDDQLQMVSTIAKHGFCFYARDVAAIAFTLDCENKMDIVSEMLGSTTDSMALGKLVRQDMKKTRTSSAGINLEKNQPQSELIPDRENESHLDIVQSTVPPRLFLSSKGVAYFDYLSSLRHISKSESTRLSQGDDRTRRQRGRVARHYLSSGTLMLSPEDIRLLDQLKLP 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3065947 3075321 + Bpe015171.1 Bpe04g00488 102297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00488 1187 MobiDBLite consensus disorder prediction 665 687 - -
Bpe04g00488 1187 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 79 1184 - -
Bpe04g00488 1187 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 10 78 - -
Bpe04g00488 1187 MobiDBLite consensus disorder prediction 62 78 - -
Bpe04g00488 1187 Gene3D - 311 555 IPR027417 -
Bpe04g00488 1187 MobiDBLite consensus disorder prediction 31 61 - -
Bpe04g00488 1187 MobiDBLite consensus disorder prediction 79 99 - -
Bpe04g00488 1187 Gene3D - 557 618 - -
Bpe04g00488 1187 MobiDBLite consensus disorder prediction 671 687 - -
Bpe04g00488 1187 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 79 1184 IPR004582 GO:0006281
Bpe04g00488 1187 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 10 78 IPR004582 GO:0006281
Bpe04g00488 1187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 611 IPR027417 -
Bpe04g00488 1187 MobiDBLite consensus disorder prediction 30 102 - -
Bpe04g00488 1187 CDD AAA 373 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00488 - - - qlo:115959785 926.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00488 Bpe-Chr4:3065947 Bpe08g00232 Bpe-Chr8:1315721 1.89E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g277 . Blo12g00671 . Bda03g00534 . Bpe04g00488 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g01807 . . . . . . . . . . . . . . . . . . . Bhi09g02667 . . . Hepe01g2278 Mch11g0825 . Cla11g01532 Cam11g1591 Cec11g1620 Cco11g1621 Clacu11g1750 Cmu11g1566 Cre11g1982 . . Chy07g00650 Cme07g00858
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005441 1 2 1 1 1 0 1 1 0 3 1 1 1 1 1 1 1 3 1 1 1 1 1 1 2 1 1 2 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00488 Bpe_Chr04 FPKM 24.324934 26.892382 21.731667 23.074635 29.504963 29.859428 30.74642 31.783916 31.848803 31.207981