Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00533 ATGAGGGAGGACGACTCTAATTGGTTCTCAAGGTGGGAGGACGAGCTCCCATCTCCTGACGAATTAATGCCTCTGTCACAAACCCTAATCACTCCTGATCTCGCTCTCGCTTTTAAAATCCGAAATCCCTCCAACTCTCCCCCTCAACGAGGCGCTCTTCCTCCTCCTCCCAGTCATTTAGCTTCCTCCGCTGCTGCTGGCGGCTGTGGTGGAGCCACCACCCAACCCAACTCATCTGAGTTTGCGGATTCAGCCGATTTGGGTTCAGGAGCCGCCGGTGACGAACCGGCAAGAACTCTCAAGCGGCCACGCCTGGTTTGGACACCACAGCTCCACAAGCGATTCGTAGACTCGGTGGCGCATTTGGGGATCAAGAATGCCGTGCCAAAGACTATAATGCAGCTGATGAGTGTGGATGGGTTGACTAGGGAAAACGTGGCTAGCCATTTGCAGAAGTACCGGCTATATCTGAAACGAACGCAGGGATTATCCAGCAAGAGCGGCGGAGGAGCCGCAGTAGTGGGCGCTGGAGGCGTTGATCCTGCTACAGATCATTTGTTTGCAAGCTCTCCTGTACCGCCTCATTTCTTGCACCCACATCCAGGTCGCCCAAATTCTGATCATTTTTTGCCTTTTGTGCCGGTGACATCTCTGCAGCAACACCACCATCACCAGCAGCAGATTGCGGTGGCCACGGCAGCTGCTATCCATCCTCAGCTGCAGCCTCAGTATCACCGACAGGTCGGCCATTTTGGGTCAACTCCGAGTGGGCAATTCGAGCATCCGTTTTCAACGAGGCAAACACAGCCAGTTCACAGGGTGGGTACACCATTGCATAATTCAATGCTGAATCACGTTGAGGACTTGGAATTGGCTAATGCTACGGGAGGAAGGAAGGTTATTGCTCTATTTCCAACTGGTGATGATTAA 930 53.12 MREDDSNWFSRWEDELPSPDELMPLSQTLITPDLALAFKIRNPSNSPPQRGALPPPPSHLASSAAAGGCGGATTQPNSSEFADSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDSVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRTQGLSSKSGGGAAVVGAGGVDPATDHLFASSPVPPHFLHPHPGRPNSDHFLPFVPVTSLQQHHHHQQQIAVATAAAIHPQLQPQYHRQVGHFGSTPSGQFEHPFSTRQTQPVHRVGTPLHNSMLNHVEDLELANATGGRKVIALFPTGDD 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3389074 3390003 - Bpe015211.1 Bpe04g00533 102342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00533 309 MobiDBLite consensus disorder prediction 68 84 - -
Bpe04g00533 309 Pfam Myb-like DNA-binding domain 106 154 IPR001005 -
Bpe04g00533 309 Gene3D - 99 160 - -
Bpe04g00533 309 SUPERFAMILY Homeodomain-like 99 159 IPR009057 -
Bpe04g00533 309 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Bpe04g00533 309 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 309 IPR044841 GO:0003700|GO:0006355
Bpe04g00533 309 MobiDBLite consensus disorder prediction 40 96 - -
Bpe04g00533 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 158 IPR017930 -
Bpe04g00533 309 MobiDBLite consensus disorder prediction 1 23 - -
Bpe04g00533 309 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 309 - -
Bpe04g00533 309 MobiDBLite consensus disorder prediction 1 18 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00533 - - - csv:101216969 414.461
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00533 Bpe-Chr4:3389074 Bpe08g00093 Bpe-Chr8:515257 9.34E-39 dispersed
Bpe02g00025 Bpe-Chr2:215854 Bpe04g00533 Bpe-Chr4:3389074 2.42E-174 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT3G24120 55.7 5.1e-77 284.6
Bpe14g00844 . 6 268 G2-like Transcription Factor Family AT3G24120 55.6 1.1e-66 250.4
Bpe07g00477 CCT 20 184 G2-like Transcription Factor Family AT3G24120 57.7 2.4e-42 169.5
Bpe15g00926 CCT 23 174 G2-like Transcription Factor Family AT3G24120 59.7 2.6e-41 166.0
Bpe12g00030 . 14 169 G2-like Transcription Factor Family AT3G24120 56.6 1.2e-38 157.1
Bpe01g00053 . 18 148 G2-like Transcription Factor Family AT3G24120 61.9 1.8e-37 153.3
Bpe02g02281 CCT 2 243 G2-like Transcription Factor Family AT1G25550 54.1 2.8e-61 232.3
Bpe13g01332 CCT 1 253 G2-like Transcription Factor Family AT1G25550 52.9 6.9e-60 227.6
Bpe13g01332 CCT 1 295 G2-like Transcription Factor Family AT1G13300 50.2 2.0e-61 233.0
Bpe08g00093 . 1 269 G2-like Transcription Factor Family AT3G46640 51.1 1.3e-62 236.9
Bpe02g00025 . 1 306 G2-like Transcription Factor Family AT5G05090 53.6 2.0e-72 269.2
Bpe04g00533 . 1 309 G2-like Transcription Factor Family AT5G05090 51.7 5.4e-70 261.2
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT4G13640 53.5 6.0e-62 234.6
Bpe14g00844 . 6 293 G2-like Transcription Factor Family AT4G13640 54.4 1.1e-55 213.8
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT3G24120 55.7 5.1e-77 284.6
Bpe14g00844 . 6 268 G2-like Transcription Factor Family AT3G24120 55.6 1.1e-66 250.4
Bpe07g00477 CCT 20 184 G2-like Transcription Factor Family AT3G24120 57.7 2.4e-42 169.5
Bpe15g00926 CCT 23 174 G2-like Transcription Factor Family AT3G24120 59.7 2.6e-41 166.0
Bpe12g00030 . 14 169 G2-like Transcription Factor Family AT3G24120 56.6 1.2e-38 157.1
Bpe01g00053 . 18 148 G2-like Transcription Factor Family AT3G24120 61.9 1.8e-37 153.3
Bpe11g01644 . 1 191 G2-like Transcription Factor Family AT1G69580 50.3 1.3e-41 167.2
Bpe15g00926 CCT 1 279 G2-like Transcription Factor Family AT1G79430 54.4 4.2e-70 261.9
Bpe07g00477 CCT 1 274 G2-like Transcription Factor Family AT1G79430 58.5 4.1e-65 245.4
Bpe12g00030 . 1 221 G2-like Transcription Factor Family AT1G79430 55.9 7.0e-57 218.0
Bpe13g00855 . 36 201 G2-like Transcription Factor Family AT1G79430 61.3 4.6e-40 162.2
Bpe08g00040 . 66 302 G2-like Transcription Factor Family AT2G01060 54.4 7.4e-55 210.7
Bpe02g00025 . 1 306 G2-like Transcription Factor Family AT3G10760 65.1 4.7e-95 344.7
Bpe04g00533 . 1 309 G2-like Transcription Factor Family AT3G10760 63.2 3.1e-91 332.0
Bpe02g00025 . 1 208 G2-like Transcription Factor Family AT2G40970 63.6 5.4e-64 241.1
Bpe04g00533 . 1 208 G2-like Transcription Factor Family AT2G40970 62.4 1.2e-60 229.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21233 PF00249 Myb_DNA-binding 5.80E-07 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00533 Bpe_Chr04 FPKM 0.0 0.0 0.0 0.0 6.370916 13.314947 6.903585 0.0 0.0 0.0