Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00533 ATGAGGGAGGACGACTCTAATTGGTTCTCAAGGTGGGAGGACGAGCTCCCATCTCCTGACGAATTAATGCCTCTGTCACAAACCCTAATCACTCCTGATCTCGCTCTCGCTTTTAAAATCCGAAATCCCTCCAACTCTCCCCCTCAACGAGGCGCTCTTCCTCCTCCTCCCAGTCATTTAGCTTCCTCCGCTGCTGCTGGCGGCTGTGGTGGAGCCACCACCCAACCCAACTCATCTGAGTTTGCGGATTCAGCCGATTTGGGTTCAGGAGCCGCCGGTGACGAACCGGCAAGAACTCTCAAGCGGCCACGCCTGGTTTGGACACCACAGCTCCACAAGCGATTCGTAGACTCGGTGGCGCATTTGGGGATCAAGAATGCCGTGCCAAAGACTATAATGCAGCTGATGAGTGTGGATGGGTTGACTAGGGAAAACGTGGCTAGCCATTTGCAGAAGTACCGGCTATATCTGAAACGAACGCAGGGATTATCCAGCAAGAGCGGCGGAGGAGCCGCAGTAGTGGGCGCTGGAGGCGTTGATCCTGCTACAGATCATTTGTTTGCAAGCTCTCCTGTACCGCCTCATTTCTTGCACCCACATCCAGGTCGCCCAAATTCTGATCATTTTTTGCCTTTTGTGCCGGTGACATCTCTGCAGCAACACCACCATCACCAGCAGCAGATTGCGGTGGCCACGGCAGCTGCTATCCATCCTCAGCTGCAGCCTCAGTATCACCGACAGGTCGGCCATTTTGGGTCAACTCCGAGTGGGCAATTCGAGCATCCGTTTTCAACGAGGCAAACACAGCCAGTTCACAGGGTGGGTACACCATTGCATAATTCAATGCTGAATCACGTTGAGGACTTGGAATTGGCTAATGCTACGGGAGGAAGGAAGGTTATTGCTCTATTTCCAACTGGTGATGATTAA 930 53.12 MREDDSNWFSRWEDELPSPDELMPLSQTLITPDLALAFKIRNPSNSPPQRGALPPPPSHLASSAAAGGCGGATTQPNSSEFADSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDSVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRTQGLSSKSGGGAAVVGAGGVDPATDHLFASSPVPPHFLHPHPGRPNSDHFLPFVPVTSLQQHHHHQQQIAVATAAAIHPQLQPQYHRQVGHFGSTPSGQFEHPFSTRQTQPVHRVGTPLHNSMLNHVEDLELANATGGRKVIALFPTGDD 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3389074 3390003 - Bpe015211.1 Bpe04g00533 102342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00533 309 MobiDBLite consensus disorder prediction 68 84 - -
Bpe04g00533 309 Pfam Myb-like DNA-binding domain 106 154 IPR001005 -
Bpe04g00533 309 Gene3D - 99 160 - -
Bpe04g00533 309 SUPERFAMILY Homeodomain-like 99 159 IPR009057 -
Bpe04g00533 309 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Bpe04g00533 309 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 309 IPR044841 GO:0003700|GO:0006355
Bpe04g00533 309 MobiDBLite consensus disorder prediction 40 96 - -
Bpe04g00533 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 158 IPR017930 -
Bpe04g00533 309 MobiDBLite consensus disorder prediction 1 23 - -
Bpe04g00533 309 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 309 - -
Bpe04g00533 309 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00533 Bpe-Chr4:3389074 Bpe08g00093 Bpe-Chr8:515257 9.34E-39 dispersed
Bpe02g00025 Bpe-Chr2:215854 Bpe04g00533 Bpe-Chr4:3389074 2.42E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21233 PF00249 Myb_DNA-binding 5.80E-07 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00533 - - csv:101216969 414.461