Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00544 ATGACTGTGACTCCGAGGATCTCCATTAACGACGGGAACCTGGTGGTTCATGGAAAGACCATACTGACTGGAATCCCAGACAACATTGTGTTGACACCAGCATCCGGTCTGGGACTCGTCGCTGGTGCATTTATTGGTGCTACGGCTTCCCATACCAAAAGCCTTCATGTCTTCCCCGTGGGTGTCCTTGAGGACCTTCGATTCATGTGTTGTTTCCGATTTAAATTATGGTGGATGACTCAGAGGATGGGAAATTGTGGAAAAGAAATTCCATTGGAGACCCAATTCCTGCTCGTGGAGAGCAAAGACAACAATGAAAGAGGAAATCATGATGTCTCTCCAACAATATACACTATTTTCCTTCCTTTACTTGAAGGCCAATTCCGTGCTGTTCTTCAAGGGAATGACAAAAATGAGGTCGAGATCTGCCTGGAGAGTGGCGACGATTCTATTGAGACGAATCAAGGTCTTAACCTAGTTTACGTGCACGCTGGGACAAATCCGTTTGAAGTTACTAGTCAAGCTGTAAATTTCTTTGATCTGGGTTCTTGTATCATAGAAAGTTTGATGTACGTGTTCGCATGCTTTTGTGATTTCAAATTTTCTTATTTTCTCAACAGGGCTGTAGAAAAGCACACCCAAGCTTTTCATCATCGCGAGAGGAAGAAGTTGCCTTCTTTCCTTGACTGGTTTGGTTGGTGCACATGGGATGCGTTTTACACTGATGTCACGGCTGAAGGAGTTGAAGAAGGCCTCAAAAGCTTGTCAGAAGGAGGAACTCCTCCTAGATTCTTAATCATAGATGATGGTTGGCAACAGATAGAGAGCAGAGGAAAGGATGCTGATTGCGAGGTTCAAGAAGGAGCACAATTTGCTAGTAGATTGACAGGAATAAAAGAGAACGCAAAATTCCAAAAGAATGGACAGAATGACGGACATGTCTCTGGACTGAAGCATGTTGTGGATGGAGCCAAGCAACATTACAATGTGAAGAATGTGTATGTGTGGCATGCTCTAGCTGGATATTGGGGTGGAGTACAGCCATTAGCTGCCGGCATGGAACATTACGACTCTGTTTTGGCGTATCCGATTCAGTCCCCGGGTGTTCTGGGTAATCAACCTGACATTGTCATGGATAGTCTAGCTGTTCATGGCCTGGGTCTTGTGCATCCAAAGAAAATATTCAACTTCTACAATGAACTTCATTCCTACTTAGCTTCATGTGGAGTAGATGGAGTAAAAGTTGATGTGCAAAACATTATTGAAACCCTTGGGGTTGGTCATGGTGGCAGAGTATCTCTGACTCGCAGCTACCATCAGGCACTGGAAGCTTCGATTTCTCGAAACTTTCCTGACAATGGATGTATTGCCTGCATGTGTCACAACACCGATGGACTCTACAGTGCTAAACAGACGGCTGTGGTCAGGGCTTCCGATGACTTCTATCCTCGGGATCCCACGTCTCACACCATTCATATTTCATCTGTGGCGTACAATACTCTCTTTCTTGGAGAATTCATGCAACCCGACTGGGATATGTTCCAAAGCCTACATCCTTCTGCTGAGTATCATGGTGCAGCTCGAGCAATTGGTGGATGCGCAATCTATGTCAGTGACAAGCCAGGAAACCACAACTTTGAACTATTAAAGAAGCTGGTTCTCCCTGATGGATCTGTTCTCCGTGCTCAACTGCCTGGAAGACCAACTCGTGATTCCCTATTCGTTGATCCTGCTAGAGATGGAACCAGCTTGCTCAAAATTTGGAATATGAACAAGTGCTCCGGTGTGGTTGGGGTGTTCAACTGCCAAGGCGCTGGTTGGTGTAAGATCACCAAGAAGACCCGCATTCACGATGAATCTCCCGGTACTCTTACCTGTTCTGTCTATGCTAACGATGTCGAGAACATTTCTCAAATTGCCGGTCCAGATTGGAATGAGGAGACTGCAGTCTATTCCTACAAATCCGGAGAGTTGATCCGACTACCAAAAGGAGTTTCTTTGCCTGTTACACTCAAGGTCCTTGAATATGAACTTTTCCATTTCTGTCCAATCAAAGAAATCACCTCCTACATTTCAATTGCACCAATTGGTCTACTTGACATGTTCAATGTCGGTGGCGCTGTGGACCAAGTCGAGATCAACCTCATATCAAAATCTGACAAGCCACATGAGCTCTTTGACGGTGAAGTTCAATCTGAGCTGACCACTTCACTGAGCAAAAACCGATCCCCGACTGCAACAATCACGTTCAAAGTCAGAGGTTGCGGCCGATTTGGTGCATACTCATCTCAAATTCCGCTCAAGTGCAAGGTTGACAATACCGACACAAACTTTGACTATGATGCCACAACTGGACTCACTACACTTACCATTCCCGTCCCAAGAGAGGATATGTTTAGATGGTCGGTGGAGATTCAATTTTGTGCTGGGTGTCTTTTTTTTTTCCTCCTTCAGGCAAAAGCATCAAAGCAGATCGGCGGACGTCAAGTTTGCCAAATCTGCAGTGACTCTGTTGGAAAAACTGTTGATGGGGAGCCGTTTGTTGCGTGCAATGTTTGTAATTTTCCTGTTTGTAGACCCTGCTATGAGTATGAAAGAAAGGATGGAAATAAGTCCTGTCCTCAATGCAAGACTAAATACAAGTGGCTTAAAGGAAGTCCTCTGGTTAATGGGGAAGAAGGAGATGATTCTGATGTTAACGGAGGGGCGAATGCTCACAATTACAATTCTAGTGAAGGAGATATGAAGTATAAGCTACCTGAACGTACGCTTAGTTGGGATACAAACTATGATAAAGAAGGATCCTTCAATCATATTCCATTGCTCACCACTGGACGCTCTGTTTCTGGAGACCTATCAGCTGCATCCCCTGAACGCCTTTCAATGGCGTCTCCAGAAAGCTTGAGCAGGACTAATTATAGAATAGTGGACCCTTCGAGAGAGGCTGGGTCGAATGGACTTGGAGGTGTAGCCTGGAAAGAGAGAATTGATGGTTGGAAGATGAAGCAGGAGAAGAGTCATCCTCCAATGAGTAGCCATGCTCCCTCTGAAGGTAGAGGAGGCGCAGACTTTGATACCAGTACTGATATTGTTATGGATGATTCTTTGCTAAATGATGAAGCGCGCCAGCCTTTATCAAGGAAGGTTTCTGTTTCATCCTCCAGGATCAATCCGTACAGGATGGTTATAGTTCTACGTCTTGTTATTCTTTCCATCTTCCTCCATTACCGTTTAACAAACCCGGTTCCCAATGCATATGCTTTATGGTTAATATCTGTCATTTGTGAGATATGGTTTGCATTTTCATGGATTTTGGATCAATTCCCCAAGTGGCTCCCTGTGAACCGTGAGACCTATCTTGATAGGCTAGCACTGAGATATGATAGAGAAGGAGAGCCTTCTCAGTTGGCGGCTGTAGACATTTTTGTGAGTACGGTTGACCCTCTAAAGGAACCTCCTCTTGTCACGGCCAACACTGTTTTGTCTATTCTGGCAGTGGACTACCCAGTCGACAAAGTTTCTTGCTATGTCTCAGATGATGGAGCTGCTATGTTGACATTTGAAGCTTTGTCTGAAACATCTGAATTTGCAAAAATATGGGTTCCTTTCTGCAAAAAATATAACATTGAGCCAAGAGCTCCAGAGTGGTATTTTTCAAAGAAGATTGACTATTTGAAAGATAAGGTTCAACCATCATTTGCCAAAGATCGAAGGGCGATGAAGAGGGAGTACGAAGAGTTTAAAATAAGAATCAATGTACTTGTTGCAAAGGCGCAAAAGATTCCTGATGAAGGGTGGATCATGCAAGATGGAACCCCTTGGCCTGGAAATAATACCAGAGACCATCCAGGAATGATCCAGGTTTTCCTAGGACAGAGTGGAGGGCTCGACAGTGAGGGTAATGAGCTACCCCGGTTAGTTTATGTATCTCGTGAGAAGCGGCCTGGATTTCAGCACCACAAGAAGGCTGGTGCCATGAACGCACTTGTTCGTGTGTCAGCTGTGCTTACAAATGGACCCTTCTTATTAAATCTCGATTGTGATCATTACATAAACAACAGCAAGGCATTGAGGGAAGCTATGTGTTTTCTAATGGATCCAAATCTTGGCAAGTCTGTTTGTTATGTTCAATTTCCTCAGAGATTTGATGGAATTGACAGAAACGATCGATATGCAAATCGAAACACAGTGTTCTTTGATATCAATTTAAGGGGCTTGGACGGCATCCAAGGTCCAGTTTACGTCGGAACAGGATGTGTTTTCAATCGAACTGCCTTGTATGGTTACGAGCCACCTGTCAAGTCTAAGCATAAGAAACGAGGACTATTCTCTTTTGGTGGGAAAAAGAGTTCGAAATCAAGTAGGAAGGGCTCTGATGGTAAAAAATCGAGCAAGCATGCTGACCCCACCGTGCCAATATTTAACCTAGAGGATATTGAGGAAGGAGTTGAAGGTTCTGGGTTTGATGATGAGAAGTCACTGCTCATGTCACAGATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCCGTTTTTGTTGCTTCGACATTGATGGAGAATGGTGGGGTTCCACAGTCAGCCATTGCTGAATCCCTCCTCAAAGAAGCTATTCACGTCATTAGTTGTGGATATGAAGACAAGACAGAGTGGGGAACTGAGATAGGATGGATCTATGGCTCTGTTACAGAGGATATTCTTACGGGTTTTAAGATGCATGCTCGTGGATGGAGATCGATCTACTGCATGCCAAAGCTTGCAGCATTTAAAGGATCAGCTCCGATAAATCTTTCCGATCGTCTAAATCAAGTGCTGCGATGGGCATTAGGTTCAGTTGAAATTCTTTTTAGTCGTCACTGTCCTATATGGTATGGCTATGGAGGAAGGCTCAAATGGCTTGAGAGATTTGCTTACATTAATACCACCATTTACCCATTGACATCTATCCCTCTTCTTGCCTACTGCACATTGCCGGCCATATGTCTGCTCACTGGCCAGTTCATCATTCCACAGATTAGTAACATTGCCAGTATCTGGTTCATATCTCTCTTTCTTTCAATCTTCGCCACCGGAATATTAGAAATGAGATGGAGTGGCGTTGGTATTGACGAATGGTGGAGAAACGAACAATTCTGGGTTATCGGTGGTGTGTCGGCCCATCTCTTCGCTGTTTTCCAAGGCCTGCTCAAAGTCCTTGCCGGAATCGACACAAATTTCACTGTCACCTCCAAAGCTTCCGATGAAGATGGCGATTTTGCCGAGCTCTACATGTTCAAATGGACAACTCTCCTCATCCCTCCGACGACTCTGCTCATCATCAACTTAGTCGGAGTAGTTGCGGGAGTCTCTTATGCCGTTAACAGTGGCTACCAATCGTGGGGTCCTCTTTTTGGGAAGCTGTTTTTTGCTTTCTGGGTGATCATCCATCTTTATCCATTCCTTAAAGGTCTGATGGGGCGCCAGAATCGAACACCCACCATCGTTGTAGTCTGGTCTATTCTCCTTGCTTCCATTTTCTCGTTGCTGTGGGTTCGAATTGATCCTTTTACCACCCGAGTTACCGGTCCTGATGTCCAACAGTGTGGAATCAACTGCTAG 5592 44.78 MTVTPRISINDGNLVVHGKTILTGIPDNIVLTPASGLGLVAGAFIGATASHTKSLHVFPVGVLEDLRFMCCFRFKLWWMTQRMGNCGKEIPLETQFLLVESKDNNERGNHDVSPTIYTIFLPLLEGQFRAVLQGNDKNEVEICLESGDDSIETNQGLNLVYVHAGTNPFEVTSQAVNFFDLGSCIIESLMYVFACFCDFKFSYFLNRAVEKHTQAFHHRERKKLPSFLDWFGWCTWDAFYTDVTAEGVEEGLKSLSEGGTPPRFLIIDDGWQQIESRGKDADCEVQEGAQFASRLTGIKENAKFQKNGQNDGHVSGLKHVVDGAKQHYNVKNVYVWHALAGYWGGVQPLAAGMEHYDSVLAYPIQSPGVLGNQPDIVMDSLAVHGLGLVHPKKIFNFYNELHSYLASCGVDGVKVDVQNIIETLGVGHGGRVSLTRSYHQALEASISRNFPDNGCIACMCHNTDGLYSAKQTAVVRASDDFYPRDPTSHTIHISSVAYNTLFLGEFMQPDWDMFQSLHPSAEYHGAARAIGGCAIYVSDKPGNHNFELLKKLVLPDGSVLRAQLPGRPTRDSLFVDPARDGTSLLKIWNMNKCSGVVGVFNCQGAGWCKITKKTRIHDESPGTLTCSVYANDVENISQIAGPDWNEETAVYSYKSGELIRLPKGVSLPVTLKVLEYELFHFCPIKEITSYISIAPIGLLDMFNVGGAVDQVEINLISKSDKPHELFDGEVQSELTTSLSKNRSPTATITFKVRGCGRFGAYSSQIPLKCKVDNTDTNFDYDATTGLTTLTIPVPREDMFRWSVEIQFCAGCLFFFLLQAKASKQIGGRQVCQICSDSVGKTVDGEPFVACNVCNFPVCRPCYEYERKDGNKSCPQCKTKYKWLKGSPLVNGEEGDDSDVNGGANAHNYNSSEGDMKYKLPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGDLSAASPERLSMASPESLSRTNYRIVDPSREAGSNGLGGVAWKERIDGWKMKQEKSHPPMSSHAPSEGRGGADFDTSTDIVMDDSLLNDEARQPLSRKVSVSSSRINPYRMVIVLRLVILSIFLHYRLTNPVPNAYALWLISVICEIWFAFSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKIWVPFCKKYNIEPRAPEWYFSKKIDYLKDKVQPSFAKDRRAMKREYEEFKIRINVLVAKAQKIPDEGWIMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDSEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPVKSKHKKRGLFSFGGKKSSKSSRKGSDGKKSSKHADPTVPIFNLEDIEEGVEGSGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAIAESLLKEAIHVISCGYEDKTEWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLAAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYINTTIYPLTSIPLLAYCTLPAICLLTGQFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGVSYAVNSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVQQCGINC 1863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3449381 3461061 - Bpe015222.1 Bpe04g00544 102353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00544 1863 SUPERFAMILY RING/U-box 826 897 - -
Bpe04g00544 1863 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 826 1863 - -
Bpe04g00544 1863 MobiDBLite consensus disorder prediction 1434 1469 - -
Bpe04g00544 1863 MobiDBLite consensus disorder prediction 1452 1466 - -
Bpe04g00544 1863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 817 905 IPR013083 -
Bpe04g00544 1863 Pfam Cellulose synthase 1139 1857 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bpe04g00544 1863 CDD mRING-HC-C4C4_CesA_plant 829 879 - -
Bpe04g00544 1863 ProSiteProfiles Zinc finger RING-type profile. 831 877 IPR001841 -
Bpe04g00544 1863 Pfam Zinc-binding RING-finger 828 897 IPR027934 -
Bpe04g00544 1863 SUPERFAMILY (Trans)glycosidases 227 557 IPR017853 -
Bpe04g00544 1863 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1259 1430 IPR029044 -
Bpe04g00544 1863 PANTHER CELLULOSE SYNTHASE 826 1863 - -
Bpe04g00544 1863 MobiDBLite consensus disorder prediction 1002 1024 - -
Bpe04g00544 1863 Pfam Raffinose synthase or seed imbibition protein Sip1 187 790 IPR008811 -
Bpe04g00544 1863 Pfam Raffinose synthase or seed imbibition protein Sip1 7 177 IPR008811 -
Bpe04g00544 1863 Gene3D Aldolase class I 229 540 IPR013785 -
Bpe04g00544 1863 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1153 1658 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00544 Bpe-Chr4:3449381 Bpe10g00547 Bpe-Chr10:12530451 0 dispersed
Bpe08g00588 Bpe-Chr8:4193890 Bpe04g00544 Bpe-Chr4:3449381 0 dispersed
Bpe15g00647 Bpe-Chr15:17249474 Bpe04g00544 Bpe-Chr4:3449381 1.71E-161 dispersed
Bpe15g00770 Bpe-Chr15:18035865 Bpe04g00544 Bpe-Chr4:3449381 6.10E-159 dispersed
Bpe04g00544 Bpe-Chr4:3449381 Bpe02g00568 Bpe-Chr2:3665264 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00544 K10999 - csv:101211779 1911.35