Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00552 ATGGCTGACCCCTACTCAAATTTCTTTACAGGTCTCTTCAAGCTCAACACGATCCACCATAACCAACCTTCTCCAAACCCTCCGCCGCACCCTGTTTTCTCCCACAACTTTTTACACCAGAGTCACCCTTTCCACCACCAAACCCCCCCGCCTTCTCCGCCTCTCCGGCAAGCCCTTCCCCTCCTCAGCCTCACGCCACTCAACCAGCAACAACAAGAAGATCCATCTCACCATTCCTGCTTCACCGCCATGGAAGTGGATCAGAAAAGCTTAAAACAGAAAGAAGAAGAAGAGGAAGAAGACGATGACGTGGCTTCTGTAACTGTTGCCCTCCATATAGGGATACCTAGCCCTAGTTCAGCTGAACTTGCTTCTGTTCTCTTTGCTTCTTCATCAGAAACCACTGATCTTAAAGATCATGGAGATGTAGATGATTTAGGGTACCATATGAACAGATTAAACAAGGGTCAGTATTGGATCCCCACTCCATCTCAGATCCTCATTGGTCCAACACAGTTTTCTTGCCCTGTTTGTTGTAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGCCATGGATCTCAGTATAGACGAGGACCAGAATCACTGAGAGGAACTCAACCAACGGGGATGCTAAGGCTTCCTTGCTACTGCTGCGCAACTGGTTGCAGAAACAACATAGACCATCCAAGGGCTAAGCCCCTTAAAGATTTTAGAACTCTCCAAACGCATTACAAAAGAAAGCATGGAATCAAGCCTTTCATGTGTAGAAAATGTGGGAAAGCCTTTGCAGTGAAAGGAGATTGGAGAACTCATGAGAAAAACTGTGGAAAGCTTTGGTATTGCATTTGTGGGTCTGATTTCAAGCACAAGAGGTCGCTTAAAGATCATATAAAAGCTTTTGGCAAGGAGCACGGAGCTTATGGAGTTGATGGGTTTGAAGAAGATGATGAACCTGCGTCTGAGGTTGAACAAGATAATGATGAA 996 45.58 MADPYSNFFTGLFKLNTIHHNQPSPNPPPHPVFSHNFLHQSHPFHHQTPPPSPPLRQALPLLSLTPLNQQQQEDPSHHSCFTAMEVDQKSLKQKEEEEEEDDDVASVTVALHIGIPSPSSAELASVLFASSSETTDLKDHGDVDDLGYHMNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCATGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGKEHGAYGVDGFEEDDEPASEVEQDNDE 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3498947 3500915 + Bpe025637 Bpe04g00552 102361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00552 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 200 IPR013087 -
Bpe04g00552 332 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Bpe04g00552 332 MobiDBLite consensus disorder prediction 19 57 - -
Bpe04g00552 332 SUPERFAMILY beta-beta-alpha zinc fingers 242 277 IPR036236 -
Bpe04g00552 332 SMART c2h2final6 173 195 IPR013087 -
Bpe04g00552 332 SMART c2h2final6 257 277 IPR013087 -
Bpe04g00552 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 277 IPR013087 -
Bpe04g00552 332 PANTHER ZINC FINGER PROTEIN WIP2 1 331 IPR043584 GO:0003700|GO:0010468
Bpe04g00552 332 SUPERFAMILY beta-beta-alpha zinc fingers 169 195 IPR036236 -
Bpe04g00552 332 MobiDBLite consensus disorder prediction 311 332 - -
Bpe04g00552 332 Gene3D Classic Zinc Finger 172 195 - -
Bpe04g00552 332 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 331 - -
Bpe04g00552 332 Gene3D Classic Zinc Finger 235 311 - -
Bpe04g00552 332 MobiDBLite consensus disorder prediction 316 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00552 Bpe-Chr4:3498947 Bpe06g00633 Bpe-Chr6:17106550 8.38E-128 dispersed
Bpe02g00007 Bpe-Chr2:71469 Bpe04g00552 Bpe-Chr4:3498947 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21236 None None None None Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00552 - - jre:108986074 514.227