Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00560 ATGGGGTTTTCAGAAGCTGTTCAACCTGACGAACAAGAAACAAAGCTTGTAGGCACTGCTTTCATGGCTTCCAATATCAAAATCAACGATCATCACACCCAGTTAGAGCAACCCCACCACCAGCTTCACTTGCAGGAAAATCATCAAATTCCTTATGGAATTTTGGTGAACTCATCATCTTCGTCCTCATCTGCCCCTGGAAATTTCATGAACAAAGACGGTGGAGCTTATGATTTAGGTGAATTAGATCAAGCACTTTTTCTTTATTTTGATGGACAAGACCCTTCCACTGTTCAAGACCAACGCCATAGCTCCGGAATGAGACCGCCAACGCTGAACATTTTTCCATCTCAGCCAATGCACGTAGAGCCCTCTTCAACACAAACAGCTACTCCCGCAGTTCCTCTCTCTTCTTCATCCAATAATGGTCCAAACAGACCATTGGAGAACAGTGCGACAATGGAATTAGGCAACCCACACAACGACGCCACTCCATCTGGAACTGCTCCTCAACCTTCGAAATCTATCAAGCGTGAGGGTAACCGGCGAGGTCCAACGTCCAGTTCTGAGCAGGAAGGACCCAAGACCCCCGATCCTAAGACATTAAGAAGGCTCGCCCAGAATAGAGAAGCTGCGAGGAAAAGCAGGCTTAGGAAAAAGGCCTACGTTCAGCAATTAGAGACCAGTAGAATTAAGCTTACTCAGCTAGAACAAGAGCTGCAAAGAGCTAGATCTCAGGGTATAATTTTCGGAGGAGCAAACGTGTTAGGAGATCCAGGTCTTTCAGTTGGCATCAACAACGTTAGCCCAGACGCTGCCGTGTTTGATATGGAGTACGGGAGGTGGCTGGAGGAACATCACCGGATAATGTGCGAGCTCAGAGCGGCAGTGCAGGAACATTTGCCGGAAAACCAGCTCCGGTTGTATGTAGAAAACTGCATAGCACACATGGACGAGATAATTAATCTGAAAAGCATGGTCGCTAAATCTGACGTTTTTCATATCATTTCCGGCTTGTGGATGACTTTGGCTGAGCGTTGCTTTATGTGGATTGGTGGATTTAGACCCTCTGAGCTCATCAAGATTATTTTGGGTCAAATCGAGCCATTAACGGAGCAGCAAATGATGGGAGTTTGTGGGTTACAGCAGTCGACTCAGGAAGGAGAAGAAGCTCTATCTCAAGGGCTTGAAGCTTTGAATAATTCACTTTCAGAAACCATAACATCTGATTCATTGACTTCTCCTCCAAACATGGCTAACTACATGGGTCAGATGGCTCTAGCCATCAACAAGCTCTCCACCATTGAAGGCTTCGTCAGACAGGCAGATAATCTGAGAATTCAAACGATTCACCGGCTTCATCATATCTTGACGATTCGTCAAAGTGCAAGGTGTTTGCTAGCAATGGCGGAGTATTTTCATAGACTTCGAGCTCTTAGTTCGCTGTGGATGGCTCGACCTAGGCAGGACTGA 1473 46.3 MGFSEAVQPDEQETKLVGTAFMASNIKINDHHTQLEQPHHQLHLQENHQIPYGILVNSSSSSSSAPGNFMNKDGGAYDLGELDQALFLYFDGQDPSTVQDQRHSSGMRPPTLNIFPSQPMHVEPSSTQTATPAVPLSSSSNNGPNRPLENSATMELGNPHNDATPSGTAPQPSKSIKREGNRRGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLTQLEQELQRARSQGIIFGGANVLGDPGLSVGINNVSPDAAVFDMEYGRWLEEHHRIMCELRAAVQEHLPENQLRLYVENCIAHMDEIINLKSMVAKSDVFHIISGLWMTLAERCFMWIGGFRPSELIKIILGQIEPLTEQQMMGVCGLQQSTQEGEEALSQGLEALNNSLSETITSDSLTSPPNMANYMGQMALAINKLSTIEGFVRQADNLRIQTIHRLHHILTIRQSARCLLAMAEYFHRLRALSSLWMARPRQD 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3545815 3551079 - Bpe015238.1 Bpe04g00560 102369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00560 490 MobiDBLite consensus disorder prediction 94 175 - -
Bpe04g00560 490 Gene3D - 199 248 - -
Bpe04g00560 490 Pfam bZIP transcription factor 200 240 IPR004827 GO:0003700|GO:0006355
Bpe04g00560 490 SUPERFAMILY Leucine zipper domain 201 243 IPR046347 GO:0003700|GO:0006355
Bpe04g00560 490 Pfam Seed dormancy control 290 363 IPR025422 GO:0006351|GO:0043565
Bpe04g00560 490 MobiDBLite consensus disorder prediction 94 203 - -
Bpe04g00560 490 Coils Coil 219 246 - -
Bpe04g00560 490 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 203 218 IPR004827 GO:0003700|GO:0006355
Bpe04g00560 490 ProSiteProfiles DOG1 domain profile. 272 486 IPR025422 GO:0006351|GO:0043565
Bpe04g00560 490 CDD bZIP_HBP1b-like 200 252 - -
Bpe04g00560 490 SMART brlzneu 196 274 IPR004827 GO:0003700|GO:0006355
Bpe04g00560 490 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 198 242 IPR004827 GO:0003700|GO:0006355
Bpe04g00560 490 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 82 489 - -
Bpe04g00560 490 PANTHER TRANSCRIPTION FACTOR TGA9 82 489 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00560 Bpe-Chr4:3545815 Bpe04g01381 Bpe-Chr4:20448925 4.43E-127 dispersed
Bpe04g00560 Bpe-Chr4:3545815 Bpe03g01087 Bpe-Chr3:30033852 1.35E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21238 PF14144 DOG1 2.40E-28 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00560 K14431 - pvy:116117562 693.73