Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00596 GTAATGTCTGCGCGCTCTTTCTCAGGCAATGCTCCGGTTACTCGGGCTTTTCTTATTTTCTCTGCGACCTTCACCGTCTTCTTCGGGATCCAAGGACGTTCTAGTAACCTAGGTTTGTCCTATCAGGATATATTTGGAAAATTCCGTCTTTGGAAGTTAATTATGTCAGTTTTTTCCTTTTCGTCCACTCCTGAACTTCTGTTCGGACTCTATTTGCTATACTACTTCAGAGTTTTTGAGCGGCAAATAGGTTCAAATAAGTACTCTGTGTTTGTTTTATTCTCTATAATAGCCTCATTACTCTTCGAGGTTCTTTCTCTAGCACTCCTTAAAGAGTCTGTAGCAAGTGTAGTCACATCTGGACCATATGGTCTTATATTTGCTTCTTTTGTACCCTTTTTCTTTGACATTCCTGTTTCCACACGATTTAATGTATTCCGTGTGCGATTCTCTGACAAGGTTTTCATATATATGGCTGGTATCCAGCAGCTTCTCTTGTCATCTTGGAGTAGATCCATCGTACCTGGTTTATGTGGCATTCTTGCTGGTTCTTTGTATCGCTTGAATGTTTTAGGCATCAGAAAGGCAAAGATTCCAGAGGGTATTCTTTCCTACTTTTCACTATTTTCTTGGCTTTCTGTTGGGGGTCCACCTTCGGCACCATCAAGAAATATTGTGGGAAACATACCACCCTTTTCTGCGCACCAAGCAGAGGCAAGTGCTAATAGGAACTCCCCTCCTCCCGTGGCTGCTGTAGTAGAGCCAACAGAGGACACAGTTTCTACACTAGTATCCATGGGATTTGACAGAGATTCAGCCAGGCAAGCTCTTGTGCATGCTCGAAACGACATGAATATGGCTACTAACATTCTTCTGGAGGCACAATCCCAT 891 42.87 VMSARSFSGNAPVTRAFLIFSATFTVFFGIQGRSSNLGLSYQDIFGKFRLWKLIMSVFSFSSTPELLFGLYLLYYFRVFERQIGSNKYSVFVLFSIIASLLFEVLSLALLKESVASVVTSGPYGLIFASFVPFFFDIPVSTRFNVFRVRFSDKVFIYMAGIQQLLLSSWSRSIVPGLCGILAGSLYRLNVLGIRKAKIPEGILSYFSLFSWLSVGGPPSAPSRNIVGNIPPFSAHQAEASANRNSPPPVAAVVEPTEDTVSTLVSMGFDRDSARQALVHARNDMNMATNILLEAQSH 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3797412 3801497 + Bpe025640 Bpe04g00596 102405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00596 297 SUPERFAMILY UBA-like 240 293 IPR009060 GO:0005515
Bpe04g00596 297 SUPERFAMILY Rhomboid-like 10 187 IPR035952 -
Bpe04g00596 297 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 254 294 IPR015940 -
Bpe04g00596 297 Pfam Rhomboid family 48 190 IPR022764 GO:0004252|GO:0016021
Bpe04g00596 297 Gene3D - 232 296 - -
Bpe04g00596 297 SMART uba_6 256 293 IPR015940 -
Bpe04g00596 297 Gene3D - 9 189 IPR035952 -
Bpe04g00596 297 Pfam UBA/TS-N domain 257 291 IPR015940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00596 K25216 UBAC2; ubiquitin-associated domain-containing protein 2 - qsu:112001685 419.853
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00678 Bpe-Chr2:4575923 Bpe04g00596 Bpe-Chr4:3797412 1.53E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1099 . . . Bda03g00633 . . . . . . . Cma07g00885 Car03g01074 Car07g00874 Sed14g0032 . . Bhi03g02494 Tan03g0497 Cmetu08g0067 . Hepe04g0503 . . Cla04g00576 . . Cco04g0720 . . Cre04g0653 . . . . Lsi01g01277 Csa06g02632 Chy08g00890 . . . . . Bpe04g00596 . . Bma04g00502 . . Cmo07g00917 . . . . . Cpe19g00440 . . . . . . . . . . . . . . . . . Cme08g01406
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004709 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 2 1 0 1 1 1 2 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00596 Bpe_Chr04 FPKM 5.066489 6.910457 7.93211 6.218727 4.461758 1.945155 3.721193 2.513068 3.205861 4.205773