Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00598 ATGCAGTCCGATAACTCGGAGCTCTACAGATTGCTTGCTGGAAATGGTTTCTTTGACGTCGGACGGAAAAGCTTATGCAGTTCTTCCTCGTACTACCCTCTCGATCAAATTTCTGGAACGCCAGATACGCTTCCATCTGCACACGAAAGAGCTCTCGTTGCTCTCAGGAATCATAAGGAGGCTGAGAAGAGGAGGAGAGAGAGAATTAATTCGCATCTCAACAAGCTTCGGAATCTTCTTTCCTGTAATTCCAAAACAGACAAAGCTTCTCTTCTTGCAAAAGTTGTTCAACGCGTGAAAGAACTAAAGCAACAAGCTTCTGAAATCTCTGGAATCGAGACTTTCCCTTCAGAAACCGATGAAATCTCTGTGCTATCCGGCGATTTGTCCGGCGACGGAAGATCGATTTTCAAAGCCTCTTTGTGCTGCGAAGATCGCTCCGACCTCATACCAGACCTTATCGATATCCTCCACTCTCTCCACTTGAAGACTCTAACAGCTGAAATGGCGACCCTCGGAGGAAGGACCAAGAACATTCTCGTTGTTGCCCCCGAAAAAGATTCCAGCGTCGAATCGGTGCATTTCCTTCAAAACGCATTGAAATCTCTGCTTGACAGTTCCAATCCCAGCGAAAGATCGAAGAGAAGACGGGTTTCAGATCGCCATGACCTACCATGA 678 46.76 MQSDNSELYRLLAGNGFFDVGRKSLCSSSSYYPLDQISGTPDTLPSAHERALVALRNHKEAEKRRRERINSHLNKLRNLLSCNSKTDKASLLAKVVQRVKELKQQASEISGIETFPSETDEISVLSGDLSGDGRSIFKASLCCEDRSDLIPDLIDILHSLHLKTLTAEMATLGGRTKNILVVAPEKDSSVESVHFLQNALKSLLDSSNPSERSKRRRVSDRHDLP 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3813447 3814646 - Bpe015273.1 Bpe04g00598 102407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00598 225 Coils Coil 59 79 - -
Bpe04g00598 225 Pfam Helix-loop-helix DNA-binding domain 57 102 IPR011598 GO:0046983
Bpe04g00598 225 PANTHER TRANSCRIPTION FACTOR BHLH30 4 221 IPR045847 GO:0003700|GO:0006355
Bpe04g00598 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Bpe04g00598 225 MobiDBLite consensus disorder prediction 206 225 - -
Bpe04g00598 225 CDD bHLH_AtAIG1_like 49 124 - -
Bpe04g00598 225 Gene3D - 49 111 IPR036638 GO:0046983
Bpe04g00598 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 111 IPR036638 GO:0046983
Bpe04g00598 225 SMART finulus 59 108 IPR011598 GO:0046983
Bpe04g00598 225 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 4 221 - -
Bpe04g00598 225 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01095 Bpe-Chr2:14569522 Bpe04g00598 Bpe-Chr4:3813447 5.41E-34 dispersed
Bpe02g02290 Bpe-Chr2:23659959 Bpe04g00598 Bpe-Chr4:3813447 1.11E-45 dispersed
Bpe04g00598 Bpe-Chr4:3813447 Bpe10g00926 Bpe-Chr10:14860690 6.60E-48 dispersed
Bpe02g00019 Bpe-Chr2:186149 Bpe04g00598 Bpe-Chr4:3813447 1.39E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21244 PF00010 HLH 4.50E-09 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00598 - K22484 qsu:111998080 308.531