Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe04g00619 | ATGAACGACTTGCTTTCTTCTACCTCCTTCCCTCGGGAAGACCACGTCATCGAGATGACGGACCCGGCGGCGTCTTCTCCGGGTGTACAACTCGGCAAATTCTTCAAAGACGTCGAGGCCATTAAAGAAGATCTTAGAGAGCTGGAGTGCCGCCGTGTAAATCTCCAGAGCTCTCACGAGAAGAGCAAAACTCTCCACAACGCTAAGGCGGTGAGAGAGCTGAGGTCGAACATGGACGCTGACGTCTCGCTGGTTCTGAGTAAGGCGAAGCTAATCAAGGTACAGCTCGAGGCTCTCGACCGGTCCAACGCCGCGAATCGAAGCTTTCCCGGGTGCGGCCCGGGATCGTCGTCGGACCGGACGCGGACCTCCGTTGTGAACGGGCTGAGAAAGAATTTGAAGGATTCGATGGAGAACTTCAGCGCTCTGAGGCAGAAGATCTCGTCGGAGTACAGAGAGACTGTGCAGCGGAGATATTTCACCGTCACCGGCGAAAATCCCGATGAGAAGACTGTTGATCTTTTGATCTCCTCAGGCGAAAGCGAGACGTTCTTACAGAAAGCGATACAACAGCAAGGGAGAGGGAGGATTCTGGACACCATAAACGAGATTCAAGAGAGGCAAGACGCAGTGAAAGAGCTGGAGAAGAATCTGAAGGAGCTGCACCAGGTGTTCATGGACATGGCCGTTCTGGTTCAAGCTCAGGGGGAGCAACTCGACGACATCGAGAGCCACGTGGCTCGTGCTCATTCCATCGTCAGAGACGGCACCAACCAGTTACAGACGGCGAGGGTCCACCAGAAGAGCACCAGAAAATGGACTGTTATAGCCATTATTATTTTGCTTATAATCATCTTGATCATCGTTCTCAGCCTTCAGCCATGGAAGTAG | 891 | 52.97 | MNDLLSSTSFPREDHVIEMTDPAASSPGVQLGKFFKDVEAIKEDLRELECRRVNLQSSHEKSKTLHNAKAVRELRSNMDADVSLVLSKAKLIKVQLEALDRSNAANRSFPGCGPGSSSDRTRTSVVNGLRKNLKDSMENFSALRQKISSEYRETVQRRYFTVTGENPDEKTVDLLISSGESETFLQKAIQQQGRGRILDTINEIQERQDAVKELEKNLKELHQVFMDMAVLVQAQGEQLDDIESHVARAHSIVRDGTNQLQTARVHQKSTRKWTVIAIIILLIIILIIVLSLQPWK | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3961756 | 3962739 | - | Bpe015297.1 | Bpe04g00619 | 102428 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe04g00619 | 296 | SMART | tSNARE_6 | 196 | 263 | IPR000727 | - | |
Bpe04g00619 | 296 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 9 | 291 | - | - | |
Bpe04g00619 | 296 | Coils | Coil | 197 | 224 | - | - | |
Bpe04g00619 | 296 | Coils | Coil | 126 | 146 | - | - | |
Bpe04g00619 | 296 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 201 | 263 | IPR000727 | - | |
Bpe04g00619 | 296 | SUPERFAMILY | t-snare proteins | 30 | 256 | IPR010989 | GO:0016020|GO:0016192 | |
Bpe04g00619 | 296 | Pfam | Syntaxin | 33 | 236 | IPR006011 | GO:0016020 | |
Bpe04g00619 | 296 | ProSitePatterns | Syntaxin / epimorphin family signature. | 207 | 246 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Bpe04g00619 | 296 | PANTHER | SYNTAXIN | 9 | 291 | IPR045242 | - | |
Bpe04g00619 | 296 | Gene3D | - | 197 | 293 | - | - | |
Bpe04g00619 | 296 | Pfam | SNARE domain | 237 | 289 | IPR000727 | - | |
Bpe04g00619 | 296 | CDD | SNARE_syntaxin1-like | 200 | 262 | - | - | |
Bpe04g00619 | 296 | CDD | SynN | 31 | 188 | IPR006011 | GO:0016020 | |
Bpe04g00619 | 296 | Gene3D | - | 30 | 161 | - | - | |
Bpe04g00619 | 296 | Coils | Coil | 38 | 58 | - | - | |
Bpe04g00619 | 296 | SMART | SynN_4 | 26 | 152 | IPR006011 | GO:0016020 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe04g00619 | Bpe-Chr4:3961756 | Bpe08g00351 | Bpe-Chr8:2103594 | 3.70E-125 | dispersed | |
Bpe02g00700 | Bpe-Chr2:4746882 | Bpe04g00619 | Bpe-Chr4:3961756 | 7.27E-169 | wgd | |
Bpe03g01190 | Bpe-Chr3:30806605 | Bpe04g00619 | Bpe-Chr4:3961756 | 6.41E-151 | wgd | |
Bpe04g00619 | Bpe-Chr4:3961756 | Bpe04g01486 | Bpe-Chr4:21389123 | 2.19E-140 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe04g00619 | K08486 | - | csv:101208931 | 438.343 |