Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00619 ATGAACGACTTGCTTTCTTCTACCTCCTTCCCTCGGGAAGACCACGTCATCGAGATGACGGACCCGGCGGCGTCTTCTCCGGGTGTACAACTCGGCAAATTCTTCAAAGACGTCGAGGCCATTAAAGAAGATCTTAGAGAGCTGGAGTGCCGCCGTGTAAATCTCCAGAGCTCTCACGAGAAGAGCAAAACTCTCCACAACGCTAAGGCGGTGAGAGAGCTGAGGTCGAACATGGACGCTGACGTCTCGCTGGTTCTGAGTAAGGCGAAGCTAATCAAGGTACAGCTCGAGGCTCTCGACCGGTCCAACGCCGCGAATCGAAGCTTTCCCGGGTGCGGCCCGGGATCGTCGTCGGACCGGACGCGGACCTCCGTTGTGAACGGGCTGAGAAAGAATTTGAAGGATTCGATGGAGAACTTCAGCGCTCTGAGGCAGAAGATCTCGTCGGAGTACAGAGAGACTGTGCAGCGGAGATATTTCACCGTCACCGGCGAAAATCCCGATGAGAAGACTGTTGATCTTTTGATCTCCTCAGGCGAAAGCGAGACGTTCTTACAGAAAGCGATACAACAGCAAGGGAGAGGGAGGATTCTGGACACCATAAACGAGATTCAAGAGAGGCAAGACGCAGTGAAAGAGCTGGAGAAGAATCTGAAGGAGCTGCACCAGGTGTTCATGGACATGGCCGTTCTGGTTCAAGCTCAGGGGGAGCAACTCGACGACATCGAGAGCCACGTGGCTCGTGCTCATTCCATCGTCAGAGACGGCACCAACCAGTTACAGACGGCGAGGGTCCACCAGAAGAGCACCAGAAAATGGACTGTTATAGCCATTATTATTTTGCTTATAATCATCTTGATCATCGTTCTCAGCCTTCAGCCATGGAAGTAG 891 52.97 MNDLLSSTSFPREDHVIEMTDPAASSPGVQLGKFFKDVEAIKEDLRELECRRVNLQSSHEKSKTLHNAKAVRELRSNMDADVSLVLSKAKLIKVQLEALDRSNAANRSFPGCGPGSSSDRTRTSVVNGLRKNLKDSMENFSALRQKISSEYRETVQRRYFTVTGENPDEKTVDLLISSGESETFLQKAIQQQGRGRILDTINEIQERQDAVKELEKNLKELHQVFMDMAVLVQAQGEQLDDIESHVARAHSIVRDGTNQLQTARVHQKSTRKWTVIAIIILLIIILIIVLSLQPWK 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3961756 3962739 - Bpe015297.1 Bpe04g00619 102428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00619 296 SMART tSNARE_6 196 263 IPR000727 -
Bpe04g00619 296 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 291 - -
Bpe04g00619 296 Coils Coil 197 224 - -
Bpe04g00619 296 Coils Coil 126 146 - -
Bpe04g00619 296 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Bpe04g00619 296 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020|GO:0016192
Bpe04g00619 296 Pfam Syntaxin 33 236 IPR006011 GO:0016020
Bpe04g00619 296 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bpe04g00619 296 PANTHER SYNTAXIN 9 291 IPR045242 -
Bpe04g00619 296 Gene3D - 197 293 - -
Bpe04g00619 296 Pfam SNARE domain 237 289 IPR000727 -
Bpe04g00619 296 CDD SNARE_syntaxin1-like 200 262 - -
Bpe04g00619 296 CDD SynN 31 188 IPR006011 GO:0016020
Bpe04g00619 296 Gene3D - 30 161 - -
Bpe04g00619 296 Coils Coil 38 58 - -
Bpe04g00619 296 SMART SynN_4 26 152 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00619 Bpe-Chr4:3961756 Bpe08g00351 Bpe-Chr8:2103594 3.70E-125 dispersed
Bpe02g00700 Bpe-Chr2:4746882 Bpe04g00619 Bpe-Chr4:3961756 7.27E-169 wgd
Bpe03g01190 Bpe-Chr3:30806605 Bpe04g00619 Bpe-Chr4:3961756 6.41E-151 wgd
Bpe04g00619 Bpe-Chr4:3961756 Bpe04g01486 Bpe-Chr4:21389123 2.19E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00619 K08486 - csv:101208931 438.343