Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00620 ATGGCGACGTACTTCCAGGGAAACTCCGATTTCCAACCACCTGACGGCTTACAAACTCTAGTCCTGATGAATCCTGCCTACTCGCAGTACTCCGACACACCCTCTCCGGCCCCCGGCAACTTCGTTTTCCTCAACACTCAGGTTGGAAATCCTCTCTATCATCCCCTCAATCTTCCTCATGCGCCGACATCTCTCTCTCAGCACTTGGTCGGCGTCCCGCTTTCTGCTACCACCTCGCCGGCTACCTCCGAAGACCCGAACTGTGTATCAATGCACACCCATCACGATGTTTCTGCCTTGCATGGCTACATCCCGCGAACACAAAGTAGCTTTTGGAGCTCAATTGATCAAACCTCATCGGTGGCGCGTGAAGCCACAGGCTCCAAGGAAGGATTGTCTCTCACCCTCTCTTCTCATCCTCCAGGATATGGATTAGTCCAAATTCCATCCCGAGCTCAACGAGTAGTATCTGGCGAGGATGTACGTATTTCAGGAGGATCATCTTCCTCAGCTTCCGGCGTTACTAACAGCATTCCAGCAATTCGAGGCATGTTGCATAGCTCGAAGTACTTGAGAGCAGCTCAGGAGCTTCTCGATGAAGTAGCAAACGTCGGCAATAATGGAGTTAAGAAAGAGACCTTGAAGAAGGCCGAGAGTCATCGGACCAAGCTGGAGGAGTCACTGGTGGCTGCCGGAGATAATTCAGTCAGAGTGGAAGAGGAAGGGAAGCCGGGTTCTGAGCTTTCTGCTGCCGAGAGGCAAGAAATCCAGATGAAGAAGGCCAAGCTTATTAACATGCTTGACGAGGTGGAGCAAAGATACAGACAATACCACCATCAAATGCAGATCCTCATTTCCTCTTTCGAACAAGCCGCAGGAATAGGCTCTGCAAGAACATACACGGCCTTGGCGCTTCAGACAATCTCTAAGCAATTCAGGTGTTTAAAAGACGCAATCACTGCTCAAATTCGAGTGGCAAACAAAAACCTAGGCGAAGAAGACGGCCATGGAAAACTTGAAGGTTCAAGACTTAGATTTGTAGACCACCATCTTAATCAACAGCGGGCTCTTCAGAGCTTGGGAATGATCCAGCACAATGCATGGAGACCCCAGAGGGGATTGCCTGAGAGATCAGTTTCTGTTCTTCGAGCATGGCTATTCGAACACTTCCTTCACCCGTATCCAAAAGATTCAGACAAACATATGCTGGCAAAACAAACAGGACTGACGAGAAGCCAGGTCTCGAATTGGTTCATTAATGCTCGAGTTCGTCTATGGAAGCCAATGGTAGAAGAAATGTACACGGAGGAAATAAAGGAGCAAGAACGGACCTTATCAGTAGAAAAAAGCAGCAAAAGCAACGACGATACAACTTCCAAATCCACAACACCATCGCCGCAAGAGAAGAGTCCTCCGACGAAAAATCAACTTTCAGGTCTCAATTCGAAACAGGGAGATTCTTTGCATCACCATGCTCCCCCTGCAATTCCTTTTCCTTCCACTGCAACATCAGTTGAAGCCGAAAATGTTCGCCAATCCGGGTTTTGGCTCATTGGGTCTTCAGAACTTGATGGAATCACACAAGGAAGTCCAAAGAGGCAACGGATTGCTGAAACGACACAGTCCACAAACAGTATGCCTATAAACATTGATATGAAACCAGGGGAAGCCAGTAATGAGCAAGTTTTTATGAAGTTTAACAATGGCAGGCACAGCAGAGATGGCTATTCTTTCATTGGAGGTCAAGCTAATTTCATCGGAGGTTTTGGGCAATACCCAATTGCAGATATTGACAGGTTCGATGCAGAGCCATTCCCGACGGGATTTTCCGGCAATGGCGTTTCTCTCACCCTCGGACTTCACCACTCAGAAAATCTCTCTTTGTCAGTTGCGAATCAAAGTTTCCTTCCGAACCAGACGATAAATTTTGGGAGACGAGTTGACATCGGCGAACCAAATGGTTTCGATGCAATTAACATATCAACACCGCACTCCACATCTGCATTTGACGGCATCGATATACAAAACCGGAAAAGATTTGTGGCGCAATTGTTGCCGGACTTTGTGGCCTGA 2073 47.85 MATYFQGNSDFQPPDGLQTLVLMNPAYSQYSDTPSPAPGNFVFLNTQVGNPLYHPLNLPHAPTSLSQHLVGVPLSATTSPATSEDPNCVSMHTHHDVSALHGYIPRTQSSFWSSIDQTSSVAREATGSKEGLSLTLSSHPPGYGLVQIPSRAQRVVSGEDVRISGGSSSSASGVTNSIPAIRGMLHSSKYLRAAQELLDEVANVGNNGVKKETLKKAESHRTKLEESLVAAGDNSVRVEEEGKPGSELSAAERQEIQMKKAKLINMLDEVEQRYRQYHHQMQILISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITAQIRVANKNLGEEDGHGKLEGSRLRFVDHHLNQQRALQSLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYTEEIKEQERTLSVEKSSKSNDDTTSKSTTPSPQEKSPPTKNQLSGLNSKQGDSLHHHAPPAIPFPSTATSVEAENVRQSGFWLIGSSELDGITQGSPKRQRIAETTQSTNSMPINIDMKPGEASNEQVFMKFNNGRHSRDGYSFIGGQANFIGGFGQYPIADIDRFDAEPFPTGFSGNGVSLTLGLHHSENLSLSVANQSFLPNQTINFGRRVDIGEPNGFDAINISTPHSTSAFDGIDIQNRKRFVAQLLPDFVA 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3964303 3966676 - Bpe015298.1 Bpe04g00620 102429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00620 690 SMART HOX_1 368 432 IPR001356 GO:0003677
Bpe04g00620 690 Coils Coil 253 280 - -
Bpe04g00620 690 SMART prehox3 178 321 IPR006563 -
Bpe04g00620 690 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 647 - -
Bpe04g00620 690 Gene3D - 364 442 - -
Bpe04g00620 690 ProSiteProfiles 'Homeobox' domain profile. 365 428 IPR001356 GO:0003677
Bpe04g00620 690 MobiDBLite consensus disorder prediction 438 455 - -
Bpe04g00620 690 SUPERFAMILY Homeodomain-like 369 435 IPR009057 -
Bpe04g00620 690 Pfam Associated with HOX 184 320 IPR006563 -
Bpe04g00620 690 CDD homeodomain 368 429 IPR001356 GO:0003677
Bpe04g00620 690 Pfam Homeobox KN domain 385 424 IPR008422 GO:0003677|GO:0006355
Bpe04g00620 690 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 647 - -
Bpe04g00620 690 MobiDBLite consensus disorder prediction 456 485 - -
Bpe04g00620 690 MobiDBLite consensus disorder prediction 438 500 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g01489 Bpe04g00620 CCT
Bpe03g01193 Bpe04g00620 CCT
Bpe02g00702 Bpe04g00620 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00372 Bpe-Chr2:2450902 Bpe04g00620 Bpe-Chr4:3964303 5.25E-91 dispersed
Bpe02g01709 Bpe-Chr2:19581890 Bpe04g00620 Bpe-Chr4:3964303 3.42E-61 dispersed
Bpe04g00620 Bpe-Chr4:3964303 Bpe11g00665 Bpe-Chr11:5111635 1.16E-84 dispersed
Bpe08g00161 Bpe-Chr8:892343 Bpe04g00620 Bpe-Chr4:3964303 6.44E-61 dispersed
Bpe02g00702 Bpe-Chr2:4780476 Bpe04g00620 Bpe-Chr4:3964303 0 wgd
Bpe03g01193 Bpe-Chr3:30826921 Bpe04g00620 Bpe-Chr4:3964303 0 wgd
Bpe04g00620 Bpe-Chr4:3964303 Bpe04g01489 Bpe-Chr4:21461045 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21246 PF07526 POX 1.70E-47 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00620 - - jre:108982860 846.269