Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00633 ATGTCAGGCGGGGCTGGAGCTCAAAATCATCAGGTTCAGCCTCCGGCGCCGTCGAGCGGCCAGATCGTGCCTCCATTGAGGCGGCACTTGGCTTTTGCGTCGACGAAGCCACCTTTCTTTCCTTCTGATGATTATCATCGCTTCAACGGCGGTAATTGCAAAGTGTTTGATCAGGAGCCTGAAGTAATTGTTGTTAAGTCTCCACAATTAAAGCGAAAGGGTGCATCAGATAAAAGAGGCAATCAATCAAATGAGTGGACCAGAAGTCCTGGATGCACTAAACCCATTAATAGTCATTTTCAGACACCTGCATCATCATCTAAAGGAGAAAGGGTGTATAACGTGTCAAAGGCTTCAAAGGGTTCTAGATCTGCGCCTCAAACACCTATTTCAACTGCCACAGGCTGCTCTTCTCCTCTTACTCCAGCAAGCAATTGTCGATATGACAGTTCCCTAGGTATTTTAACAAAAAAGTTTATCAATTTGATTAAGCATGCTGAGGATGGGATTCTTGACTTAAACAAGGCTGCAGAAACTTTGGAGGTGCAAAAAAGGAGAATATATGACATAACAAATGTCCTGGAAGGAATAGGTCTAATTGAAAAGAAGCTCAAGAACAGAATACGGTGGAAGGGCTTTTATGATCCAAAGCCTGGGAATACGGATGGTGATGTCTCCATATTACAGGCAGAAGTTGGAAGCCTTACCATTGAAGAGCGCAGATTAGACGACAAGACAAGAGAATTGCAGGAAAGATTGAGGTCCTTGAGTGAAGATAGAAACAATCAAAAATGGCTTTTTGTTACAGAAGAAGACATTAAAAGCCCACCTGGCTTTCAGAATGAAACACTAATAGCCGTTAAAGCTCCACATGGCACAACTCTTGAAGTCCCAGATCCTGAAGAAGATATTGATTATCCTCAGAAGAGATATAGGATAATTCTCAGAAGCACAATGGGTCCGATTGATGTTTACCTTGTCAGTAAGTTTGAGGAGAAATTTGAGGAGATGGAAGTGATCGAACCATCCCAGAGCTTCCAACTAGTTTCCAGTTCTGGGTCTAACGAACAATCAGCCATAGAAATGCCCAATTTGGAGATCATTCAAAAGGAAGTGACTGAGTCAAATCCACGACAGGCCAATCAAAGAAGCTTTGATTTCAATGAGTCCCATGATTATTCTGGAGTGATGAAGATTGTTCCTTCAGAACTTGATAATGATGCTGATTACTGGCTTTTATCTGATGCTGAAGTTAGCATTACGGACATGTGGAGAACTGAATCGAGTGTTAGTTGGAATGAGCCAGACATGCTTCATGCAGACTTTGGTATATCTGATCTCGGAGCCACAATGTCTCAAGCTCCTCTACCTGATATTGCTGATGCACCTACTACTGCTGTCAACTTTCATCAAAGATGA 1419 42.64 MSGGAGAQNHQVQPPAPSSGQIVPPLRRHLAFASTKPPFFPSDDYHRFNGGNCKVFDQEPEVIVVKSPQLKRKGASDKRGNQSNEWTRSPGCTKPINSHFQTPASSSKGERVYNVSKASKGSRSAPQTPISTATGCSSPLTPASNCRYDSSLGILTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGFYDPKPGNTDGDVSILQAEVGSLTIEERRLDDKTRELQERLRSLSEDRNNQKWLFVTEEDIKSPPGFQNETLIAVKAPHGTTLEVPDPEEDIDYPQKRYRIILRSTMGPIDVYLVSKFEEKFEEMEVIEPSQSFQLVSSSGSNEQSAIEMPNLEIIQKEVTESNPRQANQRSFDFNESHDYSGVMKIVPSELDNDADYWLLSDAEVSITDMWRTESSVSWNEPDMLHADFGISDLGATMSQAPLPDIADAPTTAVNFHQR 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4015537 4019171 + Bpe015310.1 Bpe04g00633 102442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00633 472 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Bpe04g00633 472 Gene3D - 220 329 - -
Bpe04g00633 472 Coils Coil 239 259 - -
Bpe04g00633 472 MobiDBLite consensus disorder prediction 80 136 - -
Bpe04g00633 472 MobiDBLite consensus disorder prediction 1 43 - -
Bpe04g00633 472 Coils Coil 163 183 - -
Bpe04g00633 472 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Bpe04g00633 472 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Bpe04g00633 472 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Bpe04g00633 472 MobiDBLite consensus disorder prediction 66 136 - -
Bpe04g00633 472 MobiDBLite consensus disorder prediction 1 17 - -
Bpe04g00633 472 PANTHER TRANSCRIPTION FACTOR E2F 13 463 IPR015633 GO:0000978|GO:0006357
Bpe04g00633 472 CDD E2F_DD 225 328 IPR032198 GO:0046983
Bpe04g00633 472 Gene3D - 141 214 IPR036388 -
Bpe04g00633 472 PANTHER E2F TRANSCRIPTION FACTOR 3-RELATED 13 463 - -
Bpe04g00633 472 SUPERFAMILY Winged helix DNA-binding domain 147 210 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00633 K06620 E2F3; transcription factor E2F3 - zju:107432237 605.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00263 Bpe-Chr1:1579944 Bpe04g00633 Bpe-Chr4:4015537 1.18E-125 dispersed
Bpe13g00264 Bpe-Chr13:10581403 Bpe04g00633 Bpe-Chr4:4015537 5.56E-06 transposed
Bpe04g00633 Bpe-Chr4:4015537 Bpe08g00221 Bpe-Chr8:1229150 2.59E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g00870 . 80 283 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-59 226.9
Bpe08g00869 . 56 284 E2F-DP Transcription Factor Family AT5G02470 50.4 2.7e-59 225.7
Bpe04g00633 . 18 468 E2F-DP Transcription Factor Family AT2G36010 53.5 1.6e-125 446.4
Bpe08g00221 CCT,ECH 22 460 E2F-DP Transcription Factor Family AT2G36010 52.7 9.7e-118 420.6
Bpe01g00263 CCT,ECH 4 323 E2F-DP Transcription Factor Family AT2G36010 59.1 3.2e-97 352.4
Bpe08g00221 CCT,ECH 10 488 E2F-DP Transcription Factor Family AT5G22220 53.8 1.0e-108 390.6
Bpe01g00263 CCT,ECH 5 350 E2F-DP Transcription Factor Family AT5G22220 57.7 1.4e-94 343.6
Bpe04g00633 . 29 434 E2F-DP Transcription Factor Family AT5G22220 51.8 1.1e-91 334.0
Bpe08g00870 . 80 283 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-59 226.9
Bpe08g00869 . 56 284 E2F-DP Transcription Factor Family AT5G02470 50.4 2.7e-59 225.7
Bpe08g00221 CCT,ECH 10 488 E2F-DP Transcription Factor Family AT5G22220 53.8 1.0e-108 390.6
Bpe01g00263 CCT,ECH 5 350 E2F-DP Transcription Factor Family AT5G22220 57.7 1.4e-94 343.6
Bpe04g00633 . 29 434 E2F-DP Transcription Factor Family AT5G22220 51.8 1.1e-91 334.0
Bpe04g00633 . 18 468 E2F-DP Transcription Factor Family AT2G36010 53.5 1.6e-125 446.4
Bpe08g00221 CCT,ECH 22 460 E2F-DP Transcription Factor Family AT2G36010 52.7 9.7e-118 420.6
Bpe01g00263 CCT,ECH 4 323 E2F-DP Transcription Factor Family AT2G36010 59.1 3.2e-97 352.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21248 PF16421 E2F_CC-MB 1.40E-31 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00633 Bpe_Chr04 FPKM 14.756614 18.741468 0.487006 0.687016 0.761856 0.413619 0.440208 0.0 0.0 0.0