Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00633 ATGTCAGGCGGGGCTGGAGCTCAAAATCATCAGGTTCAGCCTCCGGCGCCGTCGAGCGGCCAGATCGTGCCTCCATTGAGGCGGCACTTGGCTTTTGCGTCGACGAAGCCACCTTTCTTTCCTTCTGATGATTATCATCGCTTCAACGGCGGTAATTGCAAAGTGTTTGATCAGGAGCCTGAAGTAATTGTTGTTAAGTCTCCACAATTAAAGCGAAAGGGTGCATCAGATAAAAGAGGCAATCAATCAAATGAGTGGACCAGAAGTCCTGGATGCACTAAACCCATTAATAGTCATTTTCAGACACCTGCATCATCATCTAAAGGAGAAAGGGTGTATAACGTGTCAAAGGCTTCAAAGGGTTCTAGATCTGCGCCTCAAACACCTATTTCAACTGCCACAGGCTGCTCTTCTCCTCTTACTCCAGCAAGCAATTGTCGATATGACAGTTCCCTAGGTATTTTAACAAAAAAGTTTATCAATTTGATTAAGCATGCTGAGGATGGGATTCTTGACTTAAACAAGGCTGCAGAAACTTTGGAGGTGCAAAAAAGGAGAATATATGACATAACAAATGTCCTGGAAGGAATAGGTCTAATTGAAAAGAAGCTCAAGAACAGAATACGGTGGAAGGGCTTTTATGATCCAAAGCCTGGGAATACGGATGGTGATGTCTCCATATTACAGGCAGAAGTTGGAAGCCTTACCATTGAAGAGCGCAGATTAGACGACAAGACAAGAGAATTGCAGGAAAGATTGAGGTCCTTGAGTGAAGATAGAAACAATCAAAAATGGCTTTTTGTTACAGAAGAAGACATTAAAAGCCCACCTGGCTTTCAGAATGAAACACTAATAGCCGTTAAAGCTCCACATGGCACAACTCTTGAAGTCCCAGATCCTGAAGAAGATATTGATTATCCTCAGAAGAGATATAGGATAATTCTCAGAAGCACAATGGGTCCGATTGATGTTTACCTTGTCAGTAAGTTTGAGGAGAAATTTGAGGAGATGGAAGTGATCGAACCATCCCAGAGCTTCCAACTAGTTTCCAGTTCTGGGTCTAACGAACAATCAGCCATAGAAATGCCCAATTTGGAGATCATTCAAAAGGAAGTGACTGAGTCAAATCCACGACAGGCCAATCAAAGAAGCTTTGATTTCAATGAGTCCCATGATTATTCTGGAGTGATGAAGATTGTTCCTTCAGAACTTGATAATGATGCTGATTACTGGCTTTTATCTGATGCTGAAGTTAGCATTACGGACATGTGGAGAACTGAATCGAGTGTTAGTTGGAATGAGCCAGACATGCTTCATGCAGACTTTGGTATATCTGATCTCGGAGCCACAATGTCTCAAGCTCCTCTACCTGATATTGCTGATGCACCTACTACTGCTGTCAACTTTCATCAAAGATGA 1419 42.64 MSGGAGAQNHQVQPPAPSSGQIVPPLRRHLAFASTKPPFFPSDDYHRFNGGNCKVFDQEPEVIVVKSPQLKRKGASDKRGNQSNEWTRSPGCTKPINSHFQTPASSSKGERVYNVSKASKGSRSAPQTPISTATGCSSPLTPASNCRYDSSLGILTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGFYDPKPGNTDGDVSILQAEVGSLTIEERRLDDKTRELQERLRSLSEDRNNQKWLFVTEEDIKSPPGFQNETLIAVKAPHGTTLEVPDPEEDIDYPQKRYRIILRSTMGPIDVYLVSKFEEKFEEMEVIEPSQSFQLVSSSGSNEQSAIEMPNLEIIQKEVTESNPRQANQRSFDFNESHDYSGVMKIVPSELDNDADYWLLSDAEVSITDMWRTESSVSWNEPDMLHADFGISDLGATMSQAPLPDIADAPTTAVNFHQR 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4015537 4019171 + Bpe015310.1 Bpe04g00633 102442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00633 472 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Bpe04g00633 472 Gene3D - 220 329 - -
Bpe04g00633 472 Coils Coil 239 259 - -
Bpe04g00633 472 MobiDBLite consensus disorder prediction 80 136 - -
Bpe04g00633 472 MobiDBLite consensus disorder prediction 1 43 - -
Bpe04g00633 472 Coils Coil 163 183 - -
Bpe04g00633 472 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Bpe04g00633 472 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Bpe04g00633 472 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Bpe04g00633 472 MobiDBLite consensus disorder prediction 66 136 - -
Bpe04g00633 472 MobiDBLite consensus disorder prediction 1 17 - -
Bpe04g00633 472 PANTHER TRANSCRIPTION FACTOR E2F 13 463 IPR015633 GO:0000978|GO:0006357
Bpe04g00633 472 CDD E2F_DD 225 328 IPR032198 GO:0046983
Bpe04g00633 472 Gene3D - 141 214 IPR036388 -
Bpe04g00633 472 PANTHER E2F TRANSCRIPTION FACTOR 3-RELATED 13 463 - -
Bpe04g00633 472 SUPERFAMILY Winged helix DNA-binding domain 147 210 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00263 Bpe-Chr1:1579944 Bpe04g00633 Bpe-Chr4:4015537 1.18E-125 dispersed
Bpe13g00264 Bpe-Chr13:10581403 Bpe04g00633 Bpe-Chr4:4015537 5.56E-06 transposed
Bpe04g00633 Bpe-Chr4:4015537 Bpe08g00221 Bpe-Chr8:1229150 2.59E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21248 PF16421 E2F_CC-MB 1.40E-31 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00633 K06620 - zju:107432237 605.52