Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe04g00633 | ATGTCAGGCGGGGCTGGAGCTCAAAATCATCAGGTTCAGCCTCCGGCGCCGTCGAGCGGCCAGATCGTGCCTCCATTGAGGCGGCACTTGGCTTTTGCGTCGACGAAGCCACCTTTCTTTCCTTCTGATGATTATCATCGCTTCAACGGCGGTAATTGCAAAGTGTTTGATCAGGAGCCTGAAGTAATTGTTGTTAAGTCTCCACAATTAAAGCGAAAGGGTGCATCAGATAAAAGAGGCAATCAATCAAATGAGTGGACCAGAAGTCCTGGATGCACTAAACCCATTAATAGTCATTTTCAGACACCTGCATCATCATCTAAAGGAGAAAGGGTGTATAACGTGTCAAAGGCTTCAAAGGGTTCTAGATCTGCGCCTCAAACACCTATTTCAACTGCCACAGGCTGCTCTTCTCCTCTTACTCCAGCAAGCAATTGTCGATATGACAGTTCCCTAGGTATTTTAACAAAAAAGTTTATCAATTTGATTAAGCATGCTGAGGATGGGATTCTTGACTTAAACAAGGCTGCAGAAACTTTGGAGGTGCAAAAAAGGAGAATATATGACATAACAAATGTCCTGGAAGGAATAGGTCTAATTGAAAAGAAGCTCAAGAACAGAATACGGTGGAAGGGCTTTTATGATCCAAAGCCTGGGAATACGGATGGTGATGTCTCCATATTACAGGCAGAAGTTGGAAGCCTTACCATTGAAGAGCGCAGATTAGACGACAAGACAAGAGAATTGCAGGAAAGATTGAGGTCCTTGAGTGAAGATAGAAACAATCAAAAATGGCTTTTTGTTACAGAAGAAGACATTAAAAGCCCACCTGGCTTTCAGAATGAAACACTAATAGCCGTTAAAGCTCCACATGGCACAACTCTTGAAGTCCCAGATCCTGAAGAAGATATTGATTATCCTCAGAAGAGATATAGGATAATTCTCAGAAGCACAATGGGTCCGATTGATGTTTACCTTGTCAGTAAGTTTGAGGAGAAATTTGAGGAGATGGAAGTGATCGAACCATCCCAGAGCTTCCAACTAGTTTCCAGTTCTGGGTCTAACGAACAATCAGCCATAGAAATGCCCAATTTGGAGATCATTCAAAAGGAAGTGACTGAGTCAAATCCACGACAGGCCAATCAAAGAAGCTTTGATTTCAATGAGTCCCATGATTATTCTGGAGTGATGAAGATTGTTCCTTCAGAACTTGATAATGATGCTGATTACTGGCTTTTATCTGATGCTGAAGTTAGCATTACGGACATGTGGAGAACTGAATCGAGTGTTAGTTGGAATGAGCCAGACATGCTTCATGCAGACTTTGGTATATCTGATCTCGGAGCCACAATGTCTCAAGCTCCTCTACCTGATATTGCTGATGCACCTACTACTGCTGTCAACTTTCATCAAAGATGA | 1419 | 42.64 | MSGGAGAQNHQVQPPAPSSGQIVPPLRRHLAFASTKPPFFPSDDYHRFNGGNCKVFDQEPEVIVVKSPQLKRKGASDKRGNQSNEWTRSPGCTKPINSHFQTPASSSKGERVYNVSKASKGSRSAPQTPISTATGCSSPLTPASNCRYDSSLGILTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGFYDPKPGNTDGDVSILQAEVGSLTIEERRLDDKTRELQERLRSLSEDRNNQKWLFVTEEDIKSPPGFQNETLIAVKAPHGTTLEVPDPEEDIDYPQKRYRIILRSTMGPIDVYLVSKFEEKFEEMEVIEPSQSFQLVSSSGSNEQSAIEMPNLEIIQKEVTESNPRQANQRSFDFNESHDYSGVMKIVPSELDNDADYWLLSDAEVSITDMWRTESSVSWNEPDMLHADFGISDLGATMSQAPLPDIADAPTTAVNFHQR | 472 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4015537 | 4019171 | + | Bpe015310.1 | Bpe04g00633 | 102442 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe04g00633 | 472 | SUPERFAMILY | E2F-DP heterodimerization region | 225 | 329 | IPR037241 | - | |
Bpe04g00633 | 472 | Gene3D | - | 220 | 329 | - | - | |
Bpe04g00633 | 472 | Coils | Coil | 239 | 259 | - | - | |
Bpe04g00633 | 472 | MobiDBLite | consensus disorder prediction | 80 | 136 | - | - | |
Bpe04g00633 | 472 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Bpe04g00633 | 472 | Coils | Coil | 163 | 183 | - | - | |
Bpe04g00633 | 472 | SMART | E2F_TDP_2 | 147 | 212 | IPR003316 | GO:0005667|GO:0006355 | |
Bpe04g00633 | 472 | Pfam | E2F/DP family winged-helix DNA-binding domain | 149 | 212 | IPR003316 | GO:0005667|GO:0006355 | |
Bpe04g00633 | 472 | Pfam | E2F transcription factor CC-MB domain | 228 | 328 | IPR032198 | GO:0046983 | |
Bpe04g00633 | 472 | MobiDBLite | consensus disorder prediction | 66 | 136 | - | - | |
Bpe04g00633 | 472 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Bpe04g00633 | 472 | PANTHER | TRANSCRIPTION FACTOR E2F | 13 | 463 | IPR015633 | GO:0000978|GO:0006357 | |
Bpe04g00633 | 472 | CDD | E2F_DD | 225 | 328 | IPR032198 | GO:0046983 | |
Bpe04g00633 | 472 | Gene3D | - | 141 | 214 | IPR036388 | - | |
Bpe04g00633 | 472 | PANTHER | E2F TRANSCRIPTION FACTOR 3-RELATED | 13 | 463 | - | - | |
Bpe04g00633 | 472 | SUPERFAMILY | Winged helix DNA-binding domain | 147 | 210 | IPR036390 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe01g00263 | Bpe-Chr1:1579944 | Bpe04g00633 | Bpe-Chr4:4015537 | 1.18E-125 | dispersed | |
Bpe13g00264 | Bpe-Chr13:10581403 | Bpe04g00633 | Bpe-Chr4:4015537 | 5.56E-06 | transposed | |
Bpe04g00633 | Bpe-Chr4:4015537 | Bpe08g00221 | Bpe-Chr8:1229150 | 2.59E-168 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21248 | PF16421 | E2F_CC-MB | 1.40E-31 | No_clan | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe04g00633 | K06620 | - | zju:107432237 | 605.52 |