Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00664 TTGCCAGATACCCCGGGGCGTCATCCGATTTACCGAGGAGTCCGACAACGAAGTACCGGAAAATGGGTCTCTGAAATTCGAGAGCCCAGAAAACCTAATAGAATTTGGCTAGGTACATATTCGACGCCGGAAATGGCTGCCGTTGCTTACGACGTGGCTGCACTTGCGTTGAAAGGTCAAGACGCCGAACTTAATTTTCCAAACTCAGCAGCTTCTTTGCCAGTGCCGGTATCATCCTGTCCCCGTGATATCCAAGCCGCTGCTTCTTCCGCCGCCGCTGCAATTGGAGCGGCTGCCGCCGCTATGGGGCTGACTAAAGTGAATTATGAAAATAACGGGGAAAGAACCCTAAAAATGGAGGCTGAAAAACCGGCGATCAGTGAGTTTTTTGACGAGGATTTAATCTTCGATATGCCAAATGTCATAATGAATATGGCGGAGGGGATGCTTCTCAGCCCTCCTCGCCTAAACATGGCGAGTGATTACGCACCAGACGGTGAAGTAGTTGAAGAGCAAACACTTTGGACATTCACT 534 49.81 LPDTPGRHPIYRGVRQRSTGKWVSEIREPRKPNRIWLGTYSTPEMAAVAYDVAALALKGQDAELNFPNSAASLPVPVSSCPRDIQAAASSAAAAIGAAAAAMGLTKVNYENNGERTLKMEAEKPAISEFFDEDLIFDMPNVIMNMAEGMLLSPPRLNMASDYAPDGEVVEEQTLWTFT 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4198727 4199260 + Bpe025654 Bpe04g00664 102473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00664 178 SUPERFAMILY DNA-binding domain 10 69 IPR016177 GO:0003677
Bpe04g00664 178 Pfam AP2 domain 9 59 IPR001471 GO:0003700|GO:0006355
Bpe04g00664 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 177 - -
Bpe04g00664 178 SMART rav1_2 10 73 IPR001471 GO:0003700|GO:0006355
Bpe04g00664 178 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700|GO:0006355
Bpe04g00664 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 5 177 - -
Bpe04g00664 178 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700|GO:0006355
Bpe04g00664 178 PRINTS Ethylene responsive element binding protein signature 49 69 IPR001471 GO:0003700|GO:0006355
Bpe04g00664 178 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700|GO:0006355
Bpe04g00664 178 CDD AP2 9 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01247 Bpe-Chr3:31107035 Bpe04g00664 Bpe-Chr4:4198727 1.93E-77 dispersed
Bpe04g00664 Bpe-Chr4:4198727 Bpe07g00128 Bpe-Chr7:906679 8.19E-42 dispersed
Bpe04g00664 Bpe-Chr4:4198727 Bpe03g00126 Bpe-Chr3:1798623 2.41E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21253 PF00847 AP2 4.60E-12 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00664 - - jre:108985007 228.024