Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00670 AGAGAAATGGCAGAAGAGCACCGATGCGAAGCGTCTGAGGGCCACCGTCTCTGCGCTAACAACTGTGGCTTCTTCGGCAGTTCAGCGACGATGGACCTTTGCTCCAAATGCTACAGAGACTACCGTCTTAAAGAGCAACAAGAAGCGTCAACCAAATCCACCATCGAAGCTGCTCTCTCAGCCTCCTCATCATCTCCTTCCTCCACTCCGATCGAAACTGTTTCTGATGATTGTGTTCCGCCCCCGCCCATAGCCCTACCGGAGATAGCCGAAGATTCGAGAATCGCCTCCGTGGTTGGCGACGTTCCGGAGGGGGAGAGGCAGCCGAAGCGGTGCACATCGTGCCGAAAACGCGTCGGGTTGACCGGGTTCCAGTGCAGGTGTGGAACCACGTTTTGCGGGGTCCACAGGTACCCGGAGAAGCACGGATGCGCGTTCGATTTCAAGAAAGTGGGGAAGGAGGAGATAGCTCGTGCTAATCCCCTCGTCAAAGCCGATAAGTTGACCAAGATTTGA 516 55.62 REMAEEHRCEASEGHRLCANNCGFFGSSATMDLCSKCYRDYRLKEQQEASTKSTIEAALSASSSSPSSTPIETVSDDCVPPPPIALPEIAEDSRIASVVGDVPEGERQPKRCTSCRKRVGLTGFQCRCGTTFCGVHRYPEKHGCAFDFKKVGKEEIARANPLVKADKLTKI 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4248468 4248983 + Bpe015335.1 Bpe04g00670 102479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00670 171 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Bpe04g00670 171 Gene3D - 91 167 IPR035896 -
Bpe04g00670 171 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 61 - -
Bpe04g00670 171 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 6 3 171 - -
Bpe04g00670 171 MobiDBLite consensus disorder prediction 54 79 - -
Bpe04g00670 171 MobiDBLite consensus disorder prediction 54 74 - -
Bpe04g00670 171 Pfam AN1-like Zinc finger 112 148 IPR000058 GO:0008270
Bpe04g00670 171 SUPERFAMILY AN1-like Zinc finger 101 166 IPR035896 -
Bpe04g00670 171 Gene3D - 1 71 - -
Bpe04g00670 171 ProSiteProfiles Zinc finger AN1-type profile. 106 152 IPR000058 GO:0008270
Bpe04g00670 171 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Bpe04g00670 171 SMART AN1_Zf_4 112 149 IPR000058 GO:0008270
Bpe04g00670 171 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Bpe04g00670 171 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00244 Bpe-Chr1:1498463 Bpe04g00670 Bpe-Chr4:4248468 7.68E-50 dispersed
Bpe04g00670 Bpe-Chr4:4248468 Bpe08g01220 Bpe-Chr8:13810858 2.24E-50 dispersed
Bpe08g01461 Bpe-Chr8:15307632 Bpe04g00670 Bpe-Chr4:4248468 5.49E-47 transposed
Bpe02g00763 Bpe-Chr2:5475480 Bpe04g00670 Bpe-Chr4:4248468 5.80E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00670 - - csv:101211758 231.491