Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00676 ATGCTGGGTCGAACCTGCATTGTCCTGATTTCTCTTCTGATCTCTCTTTCCGAGCTTTCTGCGGCATTATCCTTGAACATCACTCTTCCGGGCCATCATCCCAACCCAGATGAGGTTGTTCAAGAATTTCACAGGAAAGTAAATGCTTCCATCACCAGAAGGGAAACTTTGCAAATCTCCCAAAACGTGGATTCTTCTTGCTTCACCGGAAACCCCATTGACGACTGCTGGAAATGCGATCCCAACTGGCCCAACGACCGCCAGAGGCTCGCCGATTGCTCTATCGGCTTCGGCCAGTACGCTCTCGGCGGCAAAAGTGGCGAGTTTTACATCGTCACAGACGATTCAGATGATGACCCCGTCAATCCGAAACCTGGGACGCTAAGATACGCGGTCATTCAGACGCAGCCTCTGTGGATCGTCTTCCCCAGTAACATGCTTATCAAGCTTTCTCAGGAGCTCATTTTCAATAGCTTCAAAACCCTGGATGGCCGGGGAGCTAACGTTCACATTGTCGGCGGTGGGTGCATCACGTTGCAGTATATAAGCAATGTAATTATTCACAATATTCATATCCACCATTGCCATCCTTCTGGGAACACTATGATCCGGTCGAGCCCAACGCATTTCGGATATCGAACGAAATCTGACGGTGATGGAATCTCCATCTTCGGATCAAGAGACATATGGATAGACCACTGTTCGCTATCGCACTGCAAGGACGGTCTAATCGACGCAGTAATGGGGTCCACCGGAATAACGATATCCAACAATTACTTTTCCCACCACGACGAGGTGATGCTGCTCGGCCACAGCGACAGCTACATGCCAGACTCCGGCATGCAGGTGACGATCGCCTTCAATCACTTCGGCGAGAACCTCGTTCAGCGAATGCCGCGGTGCCGGCGAGGCTACATTCACGTTGTCAACAACGACTTCACGCGGTGGGAAATGTACGCGATCGGTGGGAGCGGAAATCCCACTATCAACAGCCAGGGGAACCGATTCACAGCTCCATACGATCGAAACTCGAAAGAGAGATTTACAAACGAACTAATGTGGGCGCAGGTGACGAAGAGAGTGGACACGGATGAGGCGGAGTGGAGGGGATGGAATTGGAGATCGGAGGGGGATATTTTGGTGAACGGGGCATATTTCGTTGCGTCCGGGGAAGGTTTGGAGGTGAAATACGAGAAGGCATACAGCGTTGAACCCAAGTCGGCGGCTCTAATCGATCTCCTAACCTACCATGCCGGGCCACTGGGTGTCGGCGGCCGGGGCAACAATTTGGGAATGTGGAGCACAGGGCTCAACGGTGGAGGAACTGGCTTACCAGGATTTGATGGCCCTGAATACACGGACGACATGTCGGAAAGCAAACGACTGTTAAATCCAGCCCATCACCTCTTATTCATCTTCAATCTAATGCTACTATAG 1437 51.5 MLGRTCIVLISLLISLSELSAALSLNITLPGHHPNPDEVVQEFHRKVNASITRRETLQISQNVDSSCFTGNPIDDCWKCDPNWPNDRQRLADCSIGFGQYALGGKSGEFYIVTDDSDDDPVNPKPGTLRYAVIQTQPLWIVFPSNMLIKLSQELIFNSFKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTMIRSSPTHFGYRTKSDGDGISIFGSRDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYMPDSGMQVTIAFNHFGENLVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSGNPTINSQGNRFTAPYDRNSKERFTNELMWAQVTKRVDTDEAEWRGWNWRSEGDILVNGAYFVASGEGLEVKYEKAYSVEPKSAALIDLLTYHAGPLGVGGRGNNLGMWSTGLNGGGTGLPGFDGPEYTDDMSESKRLLNPAHHLLFIFNLMLL 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4287461 4289262 - Bpe015338.1 Bpe04g00676 102485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00676 478 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Bpe04g00676 478 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Bpe04g00676 478 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Bpe04g00676 478 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Bpe04g00676 478 PRINTS Pollen allergen Amb family signature 400 423 IPR018082 -
Bpe04g00676 478 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Bpe04g00676 478 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Bpe04g00676 478 PANTHER PECTATE LYASE 12-RELATED 1 440 - -
Bpe04g00676 478 Gene3D - 70 422 IPR012334 -
Bpe04g00676 478 SUPERFAMILY Pectin lyase-like 59 408 IPR011050 -
Bpe04g00676 478 Pfam Pectate lyase 156 336 IPR002022 -
Bpe04g00676 478 SMART amb_all 145 342 IPR002022 -
Bpe04g00676 478 PANTHER PECTATE LYASE 18-RELATED 1 440 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00676 Bpe-Chr4:4287461 Bpe15g01343 Bpe-Chr15:21538423 0 dispersed
Bpe15g01045 Bpe-Chr15:19798888 Bpe04g00676 Bpe-Chr4:4287461 0 wgd
Bpe04g00676 Bpe-Chr4:4287461 Bpe04g01900 Bpe-Chr4:23991902 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00676 K01728 - csv:101203012 758.444