Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00680 ATGGCTTCGCCTTTCCAATCTCTTGTGATGTTGCTCTTTGTTCATGCCATGATATTGCATGCCTATGCAAATGCTTCCTGGCAACATGCTGTTCATCGAGCAGCAGGAGGTCGAAGCTTTATTTCTATGCCTAAGCACCGCCATCGAACACCCTTCAAGGCTGGTCCGTGGAAGACCGCTCATGCCACCTTCTACGAAGGTGACTCGGGATCGTTTGGAGGTGCTTGTGGTTACGTTAATGTCGTAGACGAAGGCTATGGCCTCGAAACAGCGGCACTAAGCTCGGCTTTGTTCAACAACGGGGAGCGTTGTGGCGCATGCTATGAAATAAAATGTGCAGACAGTCCTCAATGGTGCAAGGCAGGGCAGCCATCCATCGTTATTACAGCAACAAACCATTGCCCGCCAAACTTCAACCTTCCAAACGACAATGGAGGATGGTGCAATCCACCTCGTGAGCATTTCGATTTGGCCAAACCCATCTTCCTCAAAATCGCAGAATATCAGGCTGGAATCGTTCCTATAGCATACCGAAGGTTAATATTCTTTGCTACACTTAAAAAACCAATTTTGGGTCAGACTAACAAAGGGTCCTCTCTTTTCAGGGTTCCATGCAAGAAGCAGGGAGGAATGAGGTTTACAATTACAGGAAATCCTTATTTCAACGAATTAAGAGTGTGGAACGTTGGAGGTGCCGGAGACGTGACAGAAGTGCAAGTGAAGGGGAACAAGAAGCTGAAATGGACAACCATGAATAGATCGTGGGGACAGAAATGGGAGAGTAGTGCTATGATGGTGGGGGAGTCACTCACCTTCCGAGTTAGAGCCAGTGATGGAAGATACTCCACTTCTTGGAATGTCGCCCCCAGCAATTGGCAATTCGGCCAGACCTTCGAGGGGAAAAACTTCAAGTAA 915 47.98 MASPFQSLVMLLFVHAMILHAYANASWQHAVHRAAGGRSFISMPKHRHRTPFKAGPWKTAHATFYEGDSGSFGGACGYVNVVDEGYGLETAALSSALFNNGERCGACYEIKCADSPQWCKAGQPSIVITATNHCPPNFNLPNDNGGWCNPPREHFDLAKPIFLKIAEYQAGIVPIAYRRLIFFATLKKPILGQTNKGSSLFRVPCKKQGGMRFTITGNPYFNELRVWNVGGAGDVTEVQVKGNKKLKWTTMNRSWGQKWESSAMMVGESLTFRVRASDGRYSTSWNVAPSNWQFGQTFEGKNFK 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4313941 4315570 - Bpe015342.1 Bpe04g00680 102489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00680 304 PANTHER EXPANSIN-A32 28 180 - -
Bpe04g00680 304 SUPERFAMILY Barwin-like endoglucanases 56 179 IPR036908 -
Bpe04g00680 304 PANTHER EXPANSIN-A32 202 304 - -
Bpe04g00680 304 PANTHER EXPANSIN-A15 202 304 IPR002963 GO:0009664
Bpe04g00680 304 PANTHER EXPANSIN-A15 28 180 IPR002963 GO:0009664
Bpe04g00680 304 SMART dpbb_1 90 177 IPR007112 -
Bpe04g00680 304 Pfam Expansin C-terminal domain 211 289 IPR007117 -
Bpe04g00680 304 PRINTS Expansin signature 126 136 IPR002963 GO:0009664
Bpe04g00680 304 PRINTS Expansin signature 85 99 IPR002963 GO:0009664
Bpe04g00680 304 PRINTS Expansin signature 112 123 IPR002963 GO:0009664
Bpe04g00680 304 PRINTS Expansin signature 145 162 IPR002963 GO:0009664
Bpe04g00680 304 PRINTS Expansin signature 162 175 IPR002963 GO:0009664
Bpe04g00680 304 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 220 300 IPR007117 -
Bpe04g00680 304 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 73 180 IPR007112 -
Bpe04g00680 304 SUPERFAMILY PHL pollen allergen 207 300 IPR036749 -
Bpe04g00680 304 Gene3D - 210 303 IPR036749 -
Bpe04g00680 304 PRINTS Expansin/Lol pI family signature 286 300 IPR007118 GO:0005576
Bpe04g00680 304 PRINTS Expansin/Lol pI family signature 56 71 IPR007118 GO:0005576
Bpe04g00680 304 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576
Bpe04g00680 304 Gene3D - 41 180 IPR036908 -
Bpe04g00680 304 Pfam Lytic transglycolase 90 177 IPR009009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g01037 Bpe04g00680 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00680 Bpe-Chr4:4313941 Bpe01g00128 Bpe-Chr1:758960 9.66E-112 dispersed
Bpe04g00680 Bpe-Chr4:4313941 Bpe04g01713 Bpe-Chr4:22972599 3.15E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00680 - - qsu:111997113 413.305