Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00712 ATGAGCCTCAATGGTGATCATTATAAAGAATTTCAAGAACAGAATTTCATTCTGCAAGATGAAGAAAAGGGGGTTATTTGTAAAGTTACTTGCGAGAAACAAAGACTAGGGGAAAATTATAAGTTGAAAAGCAACGCAAAAGTGAATGATTTACAAGACGGGAAAGGAGAGGCTGTTCAACTATGGGATGTTATACCAGAACGGCGGCTGCAGCCTCAAGAATCAATGGTTTGTCGGGAGAGATTTCTACATCTAAGATCCCTCAAGGTTTTGCTTGTTGAAAATGATGATTCAACTCGTCATATTGTCAGTGCACTGCTTCGCAATTGCAATTATGAAGTTATTGAGGCTGCAAATGGATTACAAGCATGGAAGATACTAGAAGATCTAAGTAATCATATTGATCTTATCCTCACGGAGGTGGTAATGCCTTGCTTTTCTGGGATTGGATTATTATGCAAGATTATGAACCATAAAACAAGAAACAATATTCCTGTGATTATGATGTCATCTCATGATTCAATGGGTTTAGTCTTTAAATGTCTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCGTGAGAAAGAATGAGCTTAAAATTCTTTGGCAGCATGTTTGGAGAAGATCCCACACTATGGATAACTCAGTGTTTTCTGCTCCCAACGAACATCTAAAAATTTCAGATATCATGAGCAAAGCTGCATCAGATTCAGATGAACCAGCACCAGAGCTTAGTTTAAAAAGACTAAGAGGAGCTGCAGACTATCAAAATGCTACGAGACGTTCAGAGTCCACGTCTTTTTCCAGGTACAACGCAGCCTCAAATTTTAACCAGGCTCTTACTGTGCAAGTGGAAAGCAGTTCTCCATGCGAAATCTCACCTGATATTCAATCAAATTCAAGTCGAAATCCTCCAAATCAAAGCTTGAACGGGGATAGTAATAACGTAGACATGGGTTCTATTACTAATAACGCATTCACCAAGTCAAATATGATGAGTAAATTCTCAGTGGTGGCACCGACGGTCCATGGTTTACAAGTATCGCCCCAGAGCAAGTCCATGAAAGAAGACAAAACATCAACACCTGAGCAAATTTTACTGGACAATTGTGATGACATGGCAACTGCGATCATGCAAGCTCAGCCGAAGGATATTAAAAGCCTCTGTGATTCGCATGTTCGTCATCTTCTCCATCAACAAACATTACCCAGCGAGCATGGAGATTTGTCATTGAAGAAAATGGCTGTAACTCTTACCCACTGTAGATCATCCAATTTAGACGGACCCATAGAAGGAAGTGCTTCAAACTTTAGTGTTGAAAGAAGTGGTTCAGGGGGTAACCCTGACAGCAATGGACAAAATGGTGAGATTGGTCCAAAGAGAAAGGAAAGGTGCACCCGGAAAGAGGTTCATTATCAGAATCATAGAAGACCTTGA 1440 40.21 MSLNGDHYKEFQEQNFILQDEEKGVICKVTCEKQRLGENYKLKSNAKVNDLQDGKGEAVQLWDVIPERRLQPQESMVCRERFLHLRSLKVLLVENDDSTRHIVSALLRNCNYEVIEAANGLQAWKILEDLSNHIDLILTEVVMPCFSGIGLLCKIMNHKTRNNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPVRKNELKILWQHVWRRSHTMDNSVFSAPNEHLKISDIMSKAASDSDEPAPELSLKRLRGAADYQNATRRSESTSFSRYNAASNFNQALTVQVESSSPCEISPDIQSNSSRNPPNQSLNGDSNNVDMGSITNNAFTKSNMMSKFSVVAPTVHGLQVSPQSKSMKEDKTSTPEQILLDNCDDMATAIMQAQPKDIKSLCDSHVRHLLHQQTLPSEHGDLSLKKMAVTLTHCRSSNLDGPIEGSASNFSVERSGSGGNPDSNGQNGEIGPKRKERCTRKEVHYQNHRRP 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4590224 4597788 + Bpe015374.1 Bpe04g00712 102521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00712 479 MobiDBLite consensus disorder prediction 288 323 - -
Bpe04g00712 479 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 210 IPR045279 GO:0009736
Bpe04g00712 479 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 32 210 - -
Bpe04g00712 479 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 212 462 - -
Bpe04g00712 479 MobiDBLite consensus disorder prediction 425 455 - -
Bpe04g00712 479 Gene3D - 87 290 - -
Bpe04g00712 479 ProSiteProfiles Response regulatory domain profile. 89 207 IPR001789 GO:0000160
Bpe04g00712 479 MobiDBLite consensus disorder prediction 457 471 - -
Bpe04g00712 479 Pfam Response regulator receiver domain 90 200 IPR001789 GO:0000160
Bpe04g00712 479 CDD psREC_PRR 90 193 - -
Bpe04g00712 479 SUPERFAMILY CheY-like 86 217 IPR011006 -
Bpe04g00712 479 SMART REC_2 88 203 IPR001789 GO:0000160
Bpe04g00712 479 MobiDBLite consensus disorder prediction 425 479 - -
Bpe04g00712 479 PANTHER TWO-COMPONENT RESPONSE REGULATOR 212 462 IPR045279 GO:0009736
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00712 Bpe-Chr4:4590224 Bpe05g01054 Bpe-Chr5:23071790 1.54E-45 dispersed
Bpe15g01310 Bpe-Chr15:21341436 Bpe04g00712 Bpe-Chr4:4590224 4.39E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21261 PF00072 Response_reg 1.30E-20 CL0304 Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00712 K12129 - zju:107432866 291.967