Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00722 ATGGTAGCCTTGCCTTACACTCTCGCCGACTCCAGCTTGCGAGCCCTAGCCGGGCAGGCGGAAGGTTTTGGGCGGTTAGCCATCGGTGGTTTACACGGTCCTCTTTATCATGTCACCACCTTAGCAGATGATGGGCCGGGATCTTTACGCTACGGATGTAGGAAGAAAGAACCGTTATGGATTGTCTTTGAAATTTCAGGAACTATTAACCTCTTATCTTTCTTGAGTTTATCATCTTATAAGACCATCGATGGCCGCGGCCAAAGGATAAAACTCACAGGGAAGGGTTTGAGGATTAAGGAATGTGAACGTGTGATTATTTGCAATCTAGAGTTTGAAGGTGGGAAAGGTCCTGATGTTGATGCTATTCAAATTAAACCGAATTCTAAGCACATATGGATAGACCGTTGCAGCCTCAGTGGATATGCTGATGGACTGATCGATATCACCCGAGAAAGCACTGATGTTACTGTTTCTAGGTGTCACTTTTCACAGCATGACAAAACGATGCTGATTGGAGCTGATCCGTCTCACGTTAGTGATCGATGTATAAGGGTGACAATTCATCATTGTTTTTTCGACGGGTGTCGCCAAAGGCATCCTCGTGTGAGATTTGCCAAAGTACACTTATACAATAATTACACGAGAAATTGGGGCATCTATGCTGTTTGTGCCAGTGTAGAATCTCAGATATACTCTCAATGTAACATCTATGAAGCAGGACAAAAGAAGGTGGCATTTAAGTATCTCACTGAGAAGGCTGCAGACAAAAACGAGGCAACAAGTGGCATCATAAAGTCGGAGGGCGACTTGTTTATTACCAAGACTGAAGCGGGTTTAATGAAAGAAAATCATGGCTGTTCCGTCTTTCATCCAACTCAGCATTACTCTAAATGGACGGTTGAACGGCCGAGTGAAGCTCTGAAGCTGATTCTCCAACGTACTTCCGGGTGGCAAGATATTCCTCTGCCTCCTGATCAATCAACTGGCAACACAAAATAG 1002 44.61 MVALPYTLADSSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRYGCRKKEPLWIVFEISGTINLLSFLSLSSYKTIDGRGQRIKLTGKGLRIKECERVIICNLEFEGGKGPDVDAIQIKPNSKHIWIDRCSLSGYADGLIDITRESTDVTVSRCHFSQHDKTMLIGADPSHVSDRCIRVTIHHCFFDGCRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKVAFKYLTEKAADKNEATSGIIKSEGDLFITKTEAGLMKENHGCSVFHPTQHYSKWTVERPSEALKLILQRTSGWQDIPLPPDQSTGNTK 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4653723 4656267 + Bpe015384.1 Bpe04g00722 102531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00722 333 SUPERFAMILY Pectin lyase-like 17 301 IPR011050 -
Bpe04g00722 333 PANTHER PECTATE LYASE 2 324 - -
Bpe04g00722 333 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Bpe04g00722 333 PRINTS Pollen allergen Amb family signature 74 90 IPR018082 -
Bpe04g00722 333 PRINTS Pollen allergen Amb family signature 19 36 IPR018082 -
Bpe04g00722 333 PANTHER PECTATE LYASE 18-RELATED 2 324 IPR045032 GO:0030570
Bpe04g00722 333 Gene3D - 7 313 IPR012334 -
Bpe04g00722 333 Pfam Pectate lyase 76 237 IPR002022 -
Bpe04g00722 333 SMART amb_all 46 244 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00722 Bpe-Chr4:4653723 Bpe02g00950 Bpe-Chr2:8589691 2.85E-48 dispersed
Bpe04g00722 Bpe-Chr4:4653723 Bpe15g01343 Bpe-Chr15:21538423 2.69E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00722 K01728 - cit:102614939 562.762