Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00775 ATGGAAATGGCTACGAGTCCACGCACTGTAGAGGAGATCTACAGAGATTATAGCGCCAGAAGAACTGGCGTTGTCCGCGCTTTGACTCGTGATGTGGATGAATTCTATAATCTCTGTGATCCAGACAAAGAAAACTTGTGTCTTTATGGGCACCCAAACGAAGCCTGGGAAGTGACTCTTCCTGCCGAAGAGGTTCCACCAGAGCTTCCAGAGCCAGTGCTTGGAATAAATTTTGCTAGAGATGGGATGAACCGGAAAGACTGGATTTCTTTAGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTAGCTTTCTATCTTGGTGCCCGTCTTAACCGGAATGAAAGGAAGCGTCTGTTTAGCTTGATCAATGATTTACCGACAGTCTTTGAAGTTGTGACTGAGAGAAACCCTGTTAAAGATAATCCCATTGTGGACAGTGGAAGCAAATCTCGATCAAGCACAAAGTTTTCACGTGTATGCATTACTCAAAGTTCCTGCCTTCTGCAGAGATCAAATGATGGTCAAGTGAAAAGCAACCCCAAAGCTGCTGAAGAAAATTACGAAGAAGTTGAAGACGAACTGAATGAAACCCTCTGTGGGAGCTGTGGTGGAAACTACAGCGCAGATGAGTTTTGGATAGGCTGCGACATATGCGAAAGGTGGTTCCATGGGAAGTGTGTAAAGATAACACCTGCTAAGGCTGAGAATATAAAGCAATACAAGTGCCCATCTTGCAGCTTGAAGAAGGGTAGACAGTAA 762 44.75 MEMATSPRTVEEIYRDYSARRTGVVRALTRDVDEFYNLCDPDKENLCLYGHPNEAWEVTLPAEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERNPVKDNPIVDSGSKSRSSTKFSRVCITQSSCLLQRSNDGQVKSNPKAAEENYEEVEDELNETLCGSCGGNYSADEFWIGCDICERWFHGKCVKITPAKAENIKQYKCPSCSLKKGRQ 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4982058 4984328 + Bpe015437.2 Bpe04g00775 102584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00775 253 PANTHER CPG BINDING PROTEIN 3 252 IPR045104 GO:0006355|GO:0042393
Bpe04g00775 253 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 252 - -
Bpe04g00775 253 Pfam PHD-finger 200 247 IPR019787 -
Bpe04g00775 253 SMART PHD_3 199 247 IPR001965 -
Bpe04g00775 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 247 IPR013083 -
Bpe04g00775 253 CDD PHD_AL_plant 199 249 IPR044104 -
Bpe04g00775 253 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Bpe04g00775 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Bpe04g00775 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Bpe04g00775 253 SUPERFAMILY FYVE/PHD zinc finger 188 251 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01140 Bpe-Chr3:30405445 Bpe04g00775 Bpe-Chr4:4982058 4.21E-86 dispersed
Bpe04g00775 Bpe-Chr4:4982058 Bpe13g01240 Bpe-Chr13:17643801 1.18E-89 dispersed
Bpe02g00909 Bpe-Chr2:7559355 Bpe04g00775 Bpe-Chr4:4982058 6.74E-135 wgd
Bpe04g00775 Bpe-Chr4:4982058 Bpe04g01807 Bpe-Chr4:23499448 4.77E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21265 PF12165 Alfin 5.40E-68 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00775 - - cit:102609983 429.098