Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00800 CTGGCTAATCCGTGGTGGACCGGCCAAGTGGGGCTGCCGATCATTGACTCGGCAGCCTCCAATTCGCCTCTTCTGAAACTCCAACACAACCGTGAAGGCTCAATGAATGATCAACACAGTCGAGAAGAAGATGAAGACGAGAGAGAAAATGGATCAGACGAACCCAAAGAAGGAGCCGTGGAGATCGGCAATCGAAGACCAAGAGGCCGCCCTCCAGGATCCAAAAACAAGCCGAAACCACCGATTTTCGTGACTCGAGACAGCCCAAACGCCCTCCGCAGCCACGTAATGGAAGTAGCCGGTGGGGCTGACGTCGCAGAGAGCGTCGCTCAGTTCGCTAGGCGCAGGCAGCGCGGCGTGTGCGTTCTGAGCGCTAGCGGCTCAGTTACTAACGTCACTCTCCGACAGCCAGCTGCACCCAGTGCTGTGGTGGCGCTGCATGGACGATTCGAGATTTTGTCACTGACCGGAGCTTTCTTACCTGGACCGGCCCCACCAGGCTCGACGGGTATGACCATTTATCTCGCCGGAGGGCAAGGGCAGGTGGTTGGTGGTTGTGTAGTTGGGCCATTAGTTGCAGCTGGGCCAGTAATGGTGATTGCTGCAACTTTTTCGAACGCCACTTACGAAAGATTACCTCTTGAAGAAGACGACGATCATGAAGCTGGTATAGGCAGTACCGGGGCTGGAACCTCGCCGCCTTCCATTGGAGGCAGTGGAGGGAGTTTTCAGCCCAATTCCTCTGATCTTTCTGCACTTCCTGTTTATAATTTTCCTCCTAGTCTTCTCCCCAATGGAGGTCAACTCGGACACGACCAGGCTGCATATGTTGCATGGGCTTCTCATGGGAGACCTAGCTTCTGA 864 55.09 LANPWWTGQVGLPIIDSAASNSPLLKLQHNREGSMNDQHSREEDEDERENGSDEPKEGAVEIGNRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVAGGADVAESVAQFARRRQRGVCVLSASGSVTNVTLRQPAAPSAVVALHGRFEILSLTGAFLPGPAPPGSTGMTIYLAGGQGQVVGGCVVGPLVAAGPVMVIAATFSNATYERLPLEEDDDHEAGIGSTGAGTSPPSIGGSGGSFQPNSSDLSALPVYNFPPSLLPNGGQLGHDQAAYVAWASHGRPSF 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5254590 5255453 + Bpe015460.1 Bpe04g00800 102609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00800 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 89 218 - -
Bpe04g00800 287 MobiDBLite consensus disorder prediction 32 64 - -
Bpe04g00800 287 CDD DUF296 93 176 IPR005175 -
Bpe04g00800 287 Gene3D - 92 222 - -
Bpe04g00800 287 MobiDBLite consensus disorder prediction 14 90 - -
Bpe04g00800 287 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 206 IPR005175 -
Bpe04g00800 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 286 IPR014476 GO:0003680
Bpe04g00800 287 MobiDBLite consensus disorder prediction 218 244 - -
Bpe04g00800 287 MobiDBLite consensus disorder prediction 228 244 - -
Bpe04g00800 287 ProSiteProfiles PPC domain profile profile. 89 225 IPR005175 -
Bpe04g00800 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 7 286 - -
Bpe04g00800 287 PIRSF ESCAROLA 11 287 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00292 Bpe-Chr2:1926632 Bpe04g00800 Bpe-Chr4:5254590 5.61E-57 dispersed
Bpe04g00800 Bpe-Chr4:5254590 Bpe04g01716 Bpe-Chr4:23004462 1.13E-88 dispersed
Bpe13g00567 Bpe-Chr13:12842623 Bpe04g00800 Bpe-Chr4:5254590 1.21E-75 wgd
Bpe14g01239 Bpe-Chr14:9332880 Bpe04g00800 Bpe-Chr4:5254590 3.84E-66 wgd
Bpe04g00800 Bpe-Chr4:5254590 Bpe05g00865 Bpe-Chr5:21849956 4.53E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00800 - - egr:104415381 348.977