Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00813 ATGCAGGCCCCTAATTCTAAAGAAGACGCTACTGAATCATCCGAAAGTGTTGAAAATTGCCAAAGGCTGTGCTCCTCTAAGTTGTGTTTGGTTGGTGGTGGCGAATGTGATGTTGAGGATGATGCGTTTCTCGACGTTTCGGGGAAAAGTTTGGAATTTCCTATGGAGAATAAGTTGGATGTTACGGTTAAAGGGCTGTATGTGTATAGAAACTTGTTTAATTTGATTCCGAAATCTCTCGGTGAATTAGGACAGTTGAAGACTTTGAAGTTTTTTGGGAATGAGATTAACTTGTTTCCATCTAAGTTGAAGAACTTGGTCGGATTGGAACGTTTGCAGGTGAAACTATCTTCACCTGGGTTTGGTGGGTTACCCTTGCATATGATCAACGGTTTGAAGGAGCTTGAGCTTTCTAAAGTGCCTCCGCGGCCTTCTGCTTTTCCCATTCTTAGTGAAATTACCAGTCTTAAGTGCTTGAAGAAGCTTTGTATCTGTCACTTCTCTATAAGATACATTCCCTCAGAAATTGGCTGCTTAAATAATTTGGAGTACTTAGATCTGTCCTTCAATAAAATCAAGACTTTGCCCACTGAAATTAGTTATTTGAATGAGTTGATATCATTGAAAGTTGCTCATAATAAATTGGTTGGAATACCGTCAGCTTTGTCCTCCCTGCAAAAGTTGGAGAGCTTGGACCTATCAAATAATAGGTTGACCTCTTTGGGGTCTCTTGACCTTCCATCAATGCATAACCTTCAAAATCTTAATCTAAAGTTCAATAAGCTTCTGAATAATTCTCGCATACCTTCCTGGATATGCTGCCATTTAGGAGGAAATGATGGAGATACATCAAATGTGGATGGGGCTAGTTCTATTGTTGAAATGGATATGTATAATGAAAACACTAAAGACAAGAGTGCAAAAGTTTCTCACAGAGGCACTCACCATGCATTATCAAGTTTATTGGGTGGATTTTCATCAAACAATAGATGTTTAATTACTCGTAGGTCAGGTAAAAGGTGGAAGCGGCAATATTATTTACAGCAGAAAGCTCGTCAAGAACGTTTAAATAACAGCAGGAAATGGAAAGGAGTAGATAATTCTGACAGTTTGACGGTGGGCCAGGATGACAATTACCAGGCTGCCAGTTTAAATACCTCTGCATCTGATACTTGTGCAGAAGCTGAATCAACTATTGTTGGTCTTGAGGACAATATAGGTATACTATCGGCAGACACTGAAAATGATAGATCACTTGAAGGTTTTGAGATCAACGAAGCCTGTTCTGAAGAAAACATCTCTTTAGAACACCACCGTGGTGCCGGTGAAAATGAATGTGGTGAGAATGATTCATCTTTTTCCTCCGCGCGTAATGGAGGAGAAGAGGAGGACGAGGATATTTCATCACTGGAGGCAGCAAAGAAATTTCATAAATTTAAAAGGCCTTCTGAAAAGTATCTTGATAACCCAAAGCCATGCAAGTCTGGTAAACCAGCTAAAGATGGTTCAACACTATCATGCAAGTACAGTAATATCTCCTTTTGCGCCACTGATGATCATCTACCAGATGGTTTCTATGATGGGGGGCGTGACAGGCCATTCATGCCAATGCAGAGCTACAAGGAAAATTTCCACATTGACTCACGTGAATTAGATGCTATTGTACTTTCTGCTGAGACGCTGATGCGGCGTTTGAAGCAGATAAATGCCATTAACGATGATAAGAATCAATCTTCTGTTGATGGTCTACTGATTGCTTCGTTGCTTGCTCTGTTTGTATCAGATCATTTTGGCGGCAGTGATAAAAGTGCCATTGTAGAAAAGACAAGGAAAGCTGTGTCTGGTTCTAACTATGAAAATCCTTTCATTTGCTCATGTTCCACTGGAAACAGGGATTGGATGGACATGTCTACTGTACCGATTGGGAATGTGGTGGAAGACATAACTTTTTCAGATCTGTGCGAGAAATCTCTGCGATCTATTAAAGCAAGAAGAAATTCCCTGATTATTCCTTTAGGGGAAGTACCATTTGGTGTGTGTAGACATAGAGCATTGCTGATGAAGTATCTATGTGACCGCATGGAGCCTCCAATTTCCTGTGAGTTAGTGAGGGGTTACCTTGATTTTTCCCCTCATGCCTGGAATGTTATTCTAGTCAAGAGAGGCAATTCATGGGTTCGAATGGTCGTCGATGCCTGTCACCCACATGATATACGAGAAGAGGCAGATCAGGAATATTTTTGCAGGTATGTTCCTCTTAGTAGGTCTACAATTCCAATGTCTCCGGGAAAGATGCCTGGTACTGGTTGTTCCTTTCCATCTCTATCTACTTGTGATAAAATTGAAAAATCAACATCCAGTTCAGTTGTAAAGTGCAAATTGGGATCCGTTGAAGCAGTAGCAAAGGTTTGTACTTTGGAAGTTTCTGTCTCTTCGATGGATCAGATTAGAAATTTCGAGTATAGCTGCCTATCAGAAGTCAGAATATTGGGTGCTCTGAAACACTCTTGCATAGTAGAGATGTATGGACATCAGATATCTTCCAAGTGGATTTCTTCTGTGGAAGGAGAACCAGAACATCGTCTCCTACAGTCTGCTATATTTTTAGAATACATAAAAGGAGGATCCTTGAAGAGATACATTGAGAAGTTGTCTGAGGTTGGAGATAAGAGTGTTTCAGTGCACTTAGTGTTATGTATTGCTAGAGATGTGACGTGTGCTTTAGCAGCCATGCATTCGAGACACATCATTCATCGTGACATAAAAAGCGATAATATATTGATTGATTTGGATACAAAGAGGGTTGATGGTTCTCCTTTAGTGAAGCTCTGTGATTTCGACAGAGCTGTCCCACTTCGTTCTTCCTTGCATACATGCTGTATTGCTCATTTTGGGGTCCCTCCTCCGGATGTTTGTGTTGGAACACCTCGTTGGATGGCCCCAGAGGTACTTCGGGCAATGCATCGATGCAATAAATATGGAGTGGAAGTGGATATTTGGTCATTTGGATGCCTACTATTGCAACTATTGACATTACAAATCCCATACTCGGAGTTATCTGAGTTACAGTTTTGTGACCAACTTAAGCTGGGAAAACGCCCACGATTGACCGAGGAGCTAGAAGCATTGTTAGACAACACATCTGCTACAAACCAAAACAAAAAATCAGAAGCAACGTCAAATGATCTCAAGTTCCTGATTGATTTATTCCATCAATGTACTCAGGAGAATCCTAGTGACCGACCAACTGCTATCAATCTTTACGAATCATTGCTGGCAAGAACAACCGATCTTTCCAGCTGA 3303 40.84 MQAPNSKEDATESSESVENCQRLCSSKLCLVGGGECDVEDDAFLDVSGKSLEFPMENKLDVTVKGLYVYRNLFNLIPKSLGELGQLKTLKFFGNEINLFPSKLKNLVGLERLQVKLSSPGFGGLPLHMINGLKELELSKVPPRPSAFPILSEITSLKCLKKLCICHFSIRYIPSEIGCLNNLEYLDLSFNKIKTLPTEISYLNELISLKVAHNKLVGIPSALSSLQKLESLDLSNNRLTSLGSLDLPSMHNLQNLNLKFNKLLNNSRIPSWICCHLGGNDGDTSNVDGASSIVEMDMYNENTKDKSAKVSHRGTHHALSSLLGGFSSNNRCLITRRSGKRWKRQYYLQQKARQERLNNSRKWKGVDNSDSLTVGQDDNYQAASLNTSASDTCAEAESTIVGLEDNIGILSADTENDRSLEGFEINEACSEENISLEHHRGAGENECGENDSSFSSARNGGEEEDEDISSLEAAKKFHKFKRPSEKYLDNPKPCKSGKPAKDGSTLSCKYSNISFCATDDHLPDGFYDGGRDRPFMPMQSYKENFHIDSRELDAIVLSAETLMRRLKQINAINDDKNQSSVDGLLIASLLALFVSDHFGGSDKSAIVEKTRKAVSGSNYENPFICSCSTGNRDWMDMSTVPIGNVVEDITFSDLCEKSLRSIKARRNSLIIPLGEVPFGVCRHRALLMKYLCDRMEPPISCELVRGYLDFSPHAWNVILVKRGNSWVRMVVDACHPHDIREEADQEYFCRYVPLSRSTIPMSPGKMPGTGCSFPSLSTCDKIEKSTSSSVVKCKLGSVEAVAKVCTLEVSVSSMDQIRNFEYSCLSEVRILGALKHSCIVEMYGHQISSKWISSVEGEPEHRLLQSAIFLEYIKGGSLKRYIEKLSEVGDKSVSVHLVLCIARDVTCALAAMHSRHIIHRDIKSDNILIDLDTKRVDGSPLVKLCDFDRAVPLRSSLHTCCIAHFGVPPPDVCVGTPRWMAPEVLRAMHRCNKYGVEVDIWSFGCLLLQLLTLQIPYSELSELQFCDQLKLGKRPRLTEELEALLDNTSATNQNKKSEATSNDLKFLIDLFHQCTQENPSDRPTAINLYESLLARTTDLSS 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5360058 5366629 - Bpe015473.1 Bpe04g00813 102622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00813 1100 ProSiteProfiles Protein kinase domain profile. 775 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g00813 1100 PRINTS Leucine-rich repeat signature 182 195 - -
Bpe04g00813 1100 PRINTS Leucine-rich repeat signature 225 238 - -
Bpe04g00813 1100 SMART serkin_6 775 1092 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g00813 1100 SMART LRR_bac_2 202 221 - -
Bpe04g00813 1100 SMART LRR_bac_2 179 198 - -
Bpe04g00813 1100 SMART LRR_bac_2 225 244 - -
Bpe04g00813 1100 SUPERFAMILY L domain-like 66 270 - -
Bpe04g00813 1100 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Bpe04g00813 1100 Pfam Ethylene-responsive protein kinase Le-CTR1 649 731 - -
Bpe04g00813 1100 MobiDBLite consensus disorder prediction 440 468 - -
Bpe04g00813 1100 SMART LRR_typ_2 249 275 IPR003591 -
Bpe04g00813 1100 SMART LRR_typ_2 225 248 IPR003591 -
Bpe04g00813 1100 SMART LRR_typ_2 179 202 IPR003591 -
Bpe04g00813 1100 Coils Coil 1037 1057 - -
Bpe04g00813 1100 Gene3D Transferase(Phosphotransferase) domain 1 772 1098 - -
Bpe04g00813 1100 PANTHER BNAC08G43810D PROTEIN 64 1096 - -
Bpe04g00813 1100 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 64 1096 - -
Bpe04g00813 1100 MobiDBLite consensus disorder prediction 481 495 - -
Bpe04g00813 1100 Gene3D Ribonuclease Inhibitor 9 309 IPR032675 -
Bpe04g00813 1100 ProSiteProfiles Leucine-rich repeat profile. 227 248 IPR001611 GO:0005515
Bpe04g00813 1100 SMART LRR_sd22_2 179 204 - -
Bpe04g00813 1100 SMART LRR_sd22_2 225 246 - -
Bpe04g00813 1100 MobiDBLite consensus disorder prediction 481 503 - -
Bpe04g00813 1100 ProSiteProfiles Leucine-rich repeat profile. 181 202 IPR001611 GO:0005515
Bpe04g00813 1100 SUPERFAMILY Protein kinase-like (PK-like) 772 1091 IPR011009 -
Bpe04g00813 1100 Pfam Protein kinase domain 785 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00813 - - - qsu:111993915 1359.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00813 Bpe05g00880 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00813 Bpe-Chr4:5360058 Bpe02g00081 Bpe-Chr2:608986 4.92E-30 dispersed
Bpe04g00813 Bpe-Chr4:5360058 Bpe05g00880 Bpe-Chr5:21947934 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63301 PF00069 Pkinase 3.20E-39 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00813 Bpe_Chr04 FPKM 3.537238 4.941437 3.939426 4.519504 9.377151 9.958154 7.834084 8.279108 7.532203 7.735533