Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00819 ATGGATTTCGGAGGAGGAGAAGAAGCGAGGAGTTTGATCAGCGATTTGGTGGAGAAATGCGGAGGATACGCTGTGGTAGACGGCGGTTTCTCAACTGAACTGGAGCGACACGGAGCTGATCTGCGCGACTCTCTGTGGAGCGCCAAATGCCTCATCTCTTCTCCTCACCTCGTCAGAAAGGTACACCTGGACTACCTTGCAGCAGGGGCAAATATCATAATAACTGGATCGTACCAGGCTACAATTCAAGGGTTTGAGGCAAAAGGGTTTTCTAGAGAAGAAAGTGAACAACTGCTTAGAAAAAGCGTTGAAATAGCATGCGAGGCTCGAGCGATGTATCACGGTGGATGCACCAAAGACGATCATCCTATTTTAGTTGCTGCTTCTGTGGGTAGCTATGGAGCTTATTTGGCGGACGGATCCGAATATAGGGGCATGTACGGGGAAGGCATCACTGTGGAAAAACTAAAGGATTTTCATAGGAGAAGGGTGCAAATTCTAGCAAACTCAGGTGCGGATCTAATAGCATTTGAGACAATTCCAAATAAGCTTGAAGCCATGGCATATGCTGATCTTCTTGGAGAAGAAGGCATACAAATTCCAGCTTGGTTTTCTTTCACTTCCATGGATGGAATCAATGCGGTCAGCGGTGATTCCATCTTCGAGTGTGCTTCTATTGCCAATTCGTGCGATAGAGTCGTTGCTGTCGGAATCAACTGCACGGCTCCGAGATTTATTCACGGGCTAATCTCGTCAATCCGAAAGGTGACGAGGAAACCAATCGTGGTGTATCCAAACAGTGGGGAAACCTACGATGGAGTGACCAAACAGTGGAAAAAATTAGATGGATTTATAGAAGAAGATTTCGTATCATACATAGGCAAGTGGAAAAGGGCAGGAGCATCCCTTTTTGGTGGTTGTTGCAAGACTACGCCTAATACAATCCGAGCCATCTCCAAATCGCTCTCTCCCAAATCCCAGGAATGA 987 46.71 MDFGGGEEARSLISDLVEKCGGYAVVDGGFSTELERHGADLRDSLWSAKCLISSPHLVRKVHLDYLAAGANIIITGSYQATIQGFEAKGFSREESEQLLRKSVEIACEARAMYHGGCTKDDHPILVAASVGSYGAYLADGSEYRGMYGEGITVEKLKDFHRRRVQILANSGADLIAFETIPNKLEAMAYADLLGEEGIQIPAWFSFTSMDGINAVSGDSIFECASIANSCDRVVAVGINCTAPRFIHGLISSIRKVTRKPIVVYPNSGETYDGVTKQWKKLDGFIEEDFVSYIGKWKRAGASLFGGCCKTTPNTIRAISKSLSPKSQE 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5404733 5407197 - Bpe015479.1 Bpe04g00819 102628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00819 328 PIRSF BHMT 285 327 IPR017226 GO:0008168|GO:0008270|GO:0009086
Bpe04g00819 328 PIRSF BHMT 1 200 IPR017226 GO:0008168|GO:0008270|GO:0009086
Bpe04g00819 328 PIRSF BHMT 209 266 IPR017226 GO:0008168|GO:0008270|GO:0009086
Bpe04g00819 328 PANTHER ZGC:172121 10 327 - -
Bpe04g00819 328 SUPERFAMILY Homocysteine S-methyltransferase 21 324 IPR036589 -
Bpe04g00819 328 PANTHER HOMOCYSTEINE S-METHYLTRANSFERASE 2-LIKE ISOFORM X1 10 327 - -
Bpe04g00819 328 Gene3D - 15 321 IPR036589 -
Bpe04g00819 328 ProSiteProfiles Homocysteine-binding domain profile. 12 322 IPR003726 -
Bpe04g00819 328 Pfam Homocysteine S-methyltransferase 25 321 IPR003726 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00819 K00547 mmuM, BHMT2; homocysteine S-methyltransferase [EC:2.1.1.10] - mnt:21392443 514.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00819 Bpe-Chr4:5404733 Bpe06g00457 Bpe-Chr6:15946295 1.37E-156 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g537 . . . . Bpe04g00819 . . . Cmo08g01107 Cmo17g00211 . . . . . . . . . . . . . . Cla06g00600 . . . . Cmu06g0620 . . . . Cone4ag0259 . Csa02g01137 Chy05g00394 . . . . . . . . . . . . Cma08g01134 Cma17g00221 Car08g01014 Car17g00196 Cpe12g00187 . . . . . . . . . . . . . . . Lsi09g01304 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000691 3 4 3 2 3 1 3 2 1 3 3 1 5 3 3 4 2 4 4 1 3 3 3 3 3 2 2 7 14 3 98
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00819 Bpe_Chr04 FPKM 22.09375 15.25982 30.754749 24.869173 22.503464 29.747868 24.287601 16.299515 16.287258 16.287264