Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00843 ATGAGTGCAAACCAGGCGGCCAATAGCAGCGCCGGATCAGGCGGCAGTGGTAGCTCCGGATCAGGCGGTGGAGGTCCTTGCGGAGCTTGTAAGTTTCTGCGCAGAAAGTGCGTGCAGGGGTGCATATTCGCTCCGTACTTCGATTCAGAGCAAGGCGCCGCCCATTTCGCAGCGGTTCACAAGGTGTTCGGCGCAAGCAATGTGTCCAAGCTCCTCCTGCATCTTCCAGTCAACAAGCGACTCGATGCTGTCATAACCATTTGTTACGAGGCTCAAGCTCGCTTAAGAGATCCTGTTTATGGCTGCGTCTCTCACATCTTTGCCCTTCAACAGCAGGTAGTGAATCTACAAGCTGAGCTCTCCTACTTACAAGCACAACTAGCAACCCTCGAGCTCCCGTTGCCGCCTCCACCGCCACCGCCTCCGCCATCTCTACTCACTCCGCTGCCGCTCTCCATCGCCAACCTCCCTTCGTCTGCCTCCATTCCCGCCTCGTATGACTTGTCGACTCTTTTCGATCCGGTGGTTCAACCAACTTGGACAGTCCAACACCGGTTGGTTGAACCTCGTCCATTTGGGTCCAGCAGCAGCCCAGCCACGGTCAGCGGTGGTGGGGGTGATCTTCAGGCATTGGCTAGAGAACTTCTTGATAGACATGGCGGTTCAACACCATGCAGTAATGACTCAACTTCTCCATCCCTTTCGAAATGA 711 55.41 MSANQAANSSAGSGGSGSSGSGGGGPCGACKFLRRKCVQGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHLPVNKRLDAVITICYEAQARLRDPVYGCVSHIFALQQQVVNLQAELSYLQAQLATLELPLPPPPPPPPPSLLTPLPLSIANLPSSASIPASYDLSTLFDPVVQPTWTVQHRLVEPRPFGSSSSPATVSGGGGDLQALARELLDRHGGSTPCSNDSTSPSLSK 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5563744 5565593 + Bpe015504.1 Bpe04g00843 102652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00843 236 MobiDBLite consensus disorder prediction 189 236 - -
Bpe04g00843 236 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 221 - -
Bpe04g00843 236 MobiDBLite consensus disorder prediction 222 236 - -
Bpe04g00843 236 MobiDBLite consensus disorder prediction 1 20 - -
Bpe04g00843 236 Coils Coil 106 126 - -
Bpe04g00843 236 ProSiteProfiles LOB domain profile. 25 127 IPR004883 -
Bpe04g00843 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 221 - -
Bpe04g00843 236 MobiDBLite consensus disorder prediction 1 22 - -
Bpe04g00843 236 Pfam Lateral organ boundaries (LOB) domain 26 124 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00843 Bpe-Chr4:5563744 Bpe05g00911 Bpe-Chr5:22121456 1.48E-111 dispersed
Bpe04g00843 Bpe-Chr4:5563744 Bpe05g00910 Bpe-Chr5:22116210 2.37E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21274 PF03195 LOB 4.00E-38 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00843 K21994 - mnt:21405253 321.242