Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00881 ATGGGAAGGGGAAGAGTTGAGCTGAAGAGGATTGAGAACAAGATCAACAGACAAGTTACGTTTGCGAAGAGAAGGAATGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCTGGTATGCTCACAACTCTGGAGAGGTACCAAAAGTGCAGCCATGGAGCACCAGAGCCTAGCATTTCCACTGGACAGGCATTGGAACTGAGCAGCCAACAGGAATATTTGAAGCTTAAAGCACGTTATGAATCACTGCTACAATCGCAAAGAAACCTCATGGGAGAAGATCTTGGTCCTCTCAGTACTAAACAACTTGAGACACTTGAAAGGCAATTGGACATGTCTCTCAGGCAGATCAGATCAGTAAGGTCTCAGTACATGTTGGATCAGCTTACTGATCTTCAGCGCAAGGAACAAGTTCTTACTGAAGCTAATAACACACTAAAACAAAAGTTGATGGAGGGCTATCAACTGAACTCACTGCAACTGAATATGGGTATTAACGATTCCGGCTACGATAAACAGCTACATCAACCAGAGGGAGATGGATTCTTCCACCCTCTAGACTGCGATCCAACTCTTCAAATTGGTTATCCTTCTGATCAAATAACAGTCCTCACCGCCGGACCAGGCGTGAGTGATAATTACTTACCAGGATGGTTGGCCTAA 732 44.54 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSGMLTTLERYQKCSHGAPEPSISTGQALELSSQQEYLKLKARYESLLQSQRNLMGEDLGPLSTKQLETLERQLDMSLRQIRSVRSQYMLDQLTDLQRKEQVLTEANNTLKQKLMEGYQLNSLQLNMGINDSGYDKQLHQPEGDGFFHPLDCDPTLQIGYPSDQITVLTAGPGVSDNYLPGWLA 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5854720 5867495 + Bpe015545.1 Bpe04g00881 102690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00881 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe04g00881 243 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Bpe04g00881 243 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe04g00881 243 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Bpe04g00881 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe04g00881 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe04g00881 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe04g00881 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe04g00881 243 Coils Coil 126 146 - -
Bpe04g00881 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bpe04g00881 243 Coils Coil 152 175 - -
Bpe04g00881 243 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe04g00881 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Bpe04g00881 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe04g00881 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Bpe04g00881 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g00881 Bpe05g00919 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00881 Bpe-Chr4:5854720 Bpe13g00816 Bpe-Chr13:14457272 2.23E-139 dispersed
Bpe04g00881 Bpe-Chr4:5854720 Bpe04g00882 Bpe-Chr4:5868457 3.60E-34 tandem
Bpe14g00797 Bpe-Chr14:6020677 Bpe04g00881 Bpe-Chr4:5854720 1.64E-137 wgd
Bpe04g00881 Bpe-Chr4:5854720 Bpe05g00948 Bpe-Chr5:22412092 1.01E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21278 PF01486 K-box 3.70E-24 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00881 - - csv:101216798 391.349