Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00891 ATTGTGGGCCATAAAAGAGGCTCGTACGCTGTTAATCAAGAAGATGATTTCATGGCCCCTACAAGCAAAAGACACAAGGCTGGTGTTTCACTCTCTACAAAGGAGAGAAAAGAGAGGCTGAATGGAAAGATCACAGCTCTTCAACAGCTCGTTTCACCGTACGGAAAGACGGATACAGCTTCTGTTCTGCAGGAAGCCATGGGTTACATTCAATTTCTCCACGAACAGCTCAAGGTGTTGAGTGCTCCGTATCTCCATGGCTCTCCGACGGCGAAGACGCAGATAGAGACGTACAGATACAGCCTAAGAATAAGAGGTTTATCCATTGTTCCTCTCTGCTTTACTGAAGGAGTAGCCCGCAGCAATGGAGCTGATATATGGGCTCCTGTTTACATTAAGTCCCCTGTATTTCACGACCCCATTTCATCACTTCAT 435 46.44 IVGHKRGSYAVNQEDDFMAPTSKRHKAGVSLSTKERKERLNGKITALQQLVSPYGKTDTASVLQEAMGYIQFLHEQLKVLSAPYLHGSPTAKTQIETYRYSLRIRGLSIVPLCFTEGVARSNGADIWAPVYIKSPVFHDPISSLH 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5961235 5962014 - Bpe025667 Bpe04g00891 102700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00891 145 PANTHER TRANSCRIPTION FACTOR BHLH154 3 125 - -
Bpe04g00891 145 CDD bHLH_AtbHLH_like 30 81 IPR045239 -
Bpe04g00891 145 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 24 73 IPR011598 GO:0046983
Bpe04g00891 145 SMART finulus 30 79 IPR011598 GO:0046983
Bpe04g00891 145 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 85 IPR036638 GO:0046983
Bpe04g00891 145 Gene3D - 20 80 IPR036638 GO:0046983
Bpe04g00891 145 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 125 - -
Bpe04g00891 145 Pfam Helix-loop-helix DNA-binding domain 34 73 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00891 - - - pper:18793757 171.785
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00891 Bpe14g00789 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00891 Bpe-Chr4:5961235 Bpe12g00300 Bpe-Chr12:4408219 1.28E-28 dispersed
Bpe14g00789 Bpe-Chr14:5980428 Bpe04g00891 Bpe-Chr4:5961235 2.12E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1321 . Blo12g00272 Bda03g00963 . Bpe04g00891 Bpe14g00789 Bma04g00857 . . . . Cma14g01438 Car06g01427 . . . . Bhi01g03682 . . . . . . . . . . . . . Cone14ag0621 Cone15ag0629 . . . . . . . . . Bda13g00540 . . . . . Cmo06g01675 Cmo14g01474 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003372 2 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 2 1 1 1 9 1 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21282 None None None None Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00891 Bpe_Chr04 FPKM 19.667068 19.911753 13.62303 13.884995 18.466927 14.941024 21.772787 20.638535 21.382919 20.65188