Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00897 ATGGTTGAGCTCCTGTTTGATGATGTTTTCAAGGTGGAGCGGTTGAATCCAGATGGTAAAAAGTTTGATAAAGTTACTCGAATTGAAGCAAAGAGTGAAAAGTTTGACATGTTCATGCACCTGGATATCAACTCAGAGATATATCCCATAAGAGAGGGTGAGAAATTTTCAATGGCACTGGCTCCAACTCTGAATTTTGACGGAACGCCTGACACTGGCTATTATCTTCAGGGAAATCGCAAGTCACTTGCTGACAAGTATGAATATGTCATGCAAGGAAAGCTATATAGAATTTCAGAAGGTTCTGGATATGGCGGCAAAGCTGAGATTGATGCTTCTTTTGGTGGACTTCTAATGATGCTGAAGGGGGATCCATCTCATTGCACTAAATTTGAGCTTGATCAGAGGCTTTTTCTTCTCATTAGGAAGGTTTGA 435 40.69 MVELLFDDVFKVERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYPIREGEKFSMALAPTLNFDGTPDTGYYLQGNRKSLADKYEYVMQGKLYRISEGSGYGGKAEIDASFGGLLMMLKGDPSHCTKFELDQRLFLLIRKV 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6016063 6017613 - Bpe015560.1 Bpe04g00897 102706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00897 144 Pfam RNA polymerase Rpb8 7 143 IPR005570 GO:0006351
Bpe04g00897 144 SUPERFAMILY Nucleic acid-binding proteins 4 143 IPR012340 -
Bpe04g00897 144 PIRSF RPB8 1 144 IPR005570 GO:0006351
Bpe04g00897 144 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 1 144 IPR005570 GO:0006351
Bpe04g00897 144 Gene3D - 6 144 IPR012340 -
Bpe04g00897 144 SMART rpol8neu 2 143 IPR005570 GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00897 K03016 RPABC3, RPB8, POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 - csv:101220087 278.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00897 Bpe-Chr4:6016063 Bpe15g00447 Bpe-Chr15:15920817 5.38E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1291 . . . . Bpe04g00897 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001797 3 3 3 3 2 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 1 2 3 4 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00897 Bpe_Chr04 FPKM 13.002692 16.538139 11.669544 11.46378 16.090979 16.807859 19.286081 10.46869 10.008261 10.839861