Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00898 ATGAGATTTGAGGAATTGCTTCACTTATTACTTTCTGCAAACTATGGAGGGATTTACTGTGAAAATATTCGAGGCTCGGTTTTGAGATCCTCTTATTCTGTACTCACTATCAGAGCTTCGGGGGTTAGAGAATATAGGGACCCCAGTGTTTCTATGAAACGTAGGAATATGATAGGGTTGGTTTTGGGAGCATCGAGCTTCTTTTTACACTCCATGGATGGATTGCCTCCAGAGGAAAAGCCTAAGCTGTATGATAATGCTTGTGAGAAGGAGCTTGAAAATTTACCAATGGTGACAACAGAGTCTGGTTTCCAATATAAGGATATCAAAGTTGGTCAGGGGCCTAGTCCGCTGATTGGCTTTCAGGTGGGTAAATTCATGGTTCATAATTGTAATACTTCAAAAATACAATGTCAAATGCGCAGTTCGTTGAAGAAGGATCAGCTACGTCTATTTTGTGTTAGTTCTGAACAGGTGATCAAGGGACTAGATGAAGGAATCTTGAGCATGAAAGCCAGGGGAAAGCGCCGGCTCTATATTCCTAGAAACGCATGTCATTTTTGTTTGGCATTCCCCAAAGGTCTCAATGCTTCGCCAGGAAGGCTGAGGGTGGGTCCAAACAGTCCTGTAATCTTCGATGTAAGTTTGGAGTATATACCAAGGCTTGAATTTGATGAAGAGTAG 684 42.11 MRFEELLHLLLSANYGGIYCENIRGSVLRSSYSVLTIRASGVREYRDPSVSMKRRNMIGLVLGASSFFLHSMDGLPPEEKPKLYDNACEKELENLPMVTTESGFQYKDIKVGQGPSPLIGFQVGKFMVHNCNTSKIQCQMRSSLKKDQLRLFCVSSEQVIKGLDEGILSMKARGKRRLYIPRNACHFCLAFPKGLNASPGRLRVGPNSPVIFDVSLEYIPRLEFDEE 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6018654 6020802 + Bpe015561.2 Bpe04g00898 102707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00898 227 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 142 216 IPR001179 GO:0003755
Bpe04g00898 227 Gene3D - 93 220 IPR046357 GO:0003755
Bpe04g00898 227 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 142 220 IPR001179 GO:0003755
Bpe04g00898 227 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 35 227 - -
Bpe04g00898 227 SUPERFAMILY FKBP-like 88 216 - -
Bpe04g00898 227 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-3, CHLOROPLASTIC 35 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00898 K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] - jre:108980458 226.868
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00898 Bpe-Chr4:6018654 Bpe06g00526 Bpe-Chr6:16375644 3.42E-117 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1287 . . Bda03g00972 . Bpe04g00898 . . . . . . Cma14g01427 . Car14g01257 Sed12g0549 . Cpe03g01199 Bhi01g03696 Tan10g1419 Cmetu07g0756 . . . . . . . . . . . . . . Cone11ag0649 . . . Cme07g01953 . . . . . . . . . . Cmo14g01463 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009069 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00898 Bpe_Chr04 FPKM 26.658602 27.073109 12.923523 12.801888 18.038366 17.903265 17.899416 12.2835 10.837616 12.504265