Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00902 ATGAAAATACAGTGTGATGTGTGCGAGAAAGCTCCGGCGACGGTGATTTGCTGCGCAGATGAGGCGGCGCTGTGTGCGAAATGTGACGTCGAAGTTCATGCAGCGAACAAGCTCGCAAGCAAGCACCAGAGGCTTCCTCTTCAATGCCTCTCCGGCAAGCTCCCCAAGTGTGACATATGCCAAGAAAAGACAGCTTTTATATTCTGTGTAGAAGATAGAGCCCTGTTTTGCGAGGATTGCGATGAGCCAATTCACTCGCGGGGAAGCCTTTCAAGAAACCACCAACGATTCCTAGCAACCGGAATCCGGGTAGCACTGAGCTCGAGTTGTTCAAAGGAGATGGAAAAGAGTTCGATGGAGCCTCCAAATCAGAAGAAACAACAGCTTTCTCCACAGCGGTCTAATATCGATTCATCCCCTTGGACTGTCGAGGACGTCCTCCGTTTATCAGAATTTGAAACCCCCTACAAGGCAAGAAATCTACTTCAGAAGGAGCAGCTCGAGTTTGGCGAGCTTGAATGGCTGGCGGAAATGGGTATTTTTGGGGAGCAGATTCCACAAGAGGCAATGACAGCAGCAGAAGTTCCTGAGCTTCCAAGATCACAGCCTAGCAACATCTCATACAGAACCACCAAATCGTCACCCCCTTTCAAGAAGCCTAGGATCGAGAATTTTGACGAAGACGAGGAGTACTTCATTGTTCCCGATCTTGGT 714 49.3 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLPLQCLSGKLPKCDICQEKTAFIFCVEDRALFCEDCDEPIHSRGSLSRNHQRFLATGIRVALSSSCSKEMEKSSMEPPNQKKQQLSPQRSNIDSSPWTVEDVLRLSEFETPYKARNLLQKEQLEFGELEWLAEMGIFGEQIPQEAMTAAEVPELPRSQPSNISYRTTKSSPPFKKPRIENFDEDEEYFIVPDLG 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6044861 6045833 + Bpe025668 Bpe04g00902 102711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00902 238 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bpe04g00902 238 MobiDBLite consensus disorder prediction 195 221 - -
Bpe04g00902 238 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Bpe04g00902 238 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Bpe04g00902 238 SMART bboxneu5 52 99 IPR000315 GO:0008270
Bpe04g00902 238 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bpe04g00902 238 MobiDBLite consensus disorder prediction 113 137 - -
Bpe04g00902 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 238 - -
Bpe04g00902 238 Gene3D Classic Zinc Finger 1 95 - -
Bpe04g00902 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bpe04g00902 238 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 238 - -
Bpe04g00902 238 MobiDBLite consensus disorder prediction 198 214 - -
Bpe04g00902 238 CDD Bbox1_BBX-like 5 47 - -
Bpe04g00902 238 CDD Bbox1_BBX-like 56 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00902 - - - cit:102626697 347.436
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00902 Bpe05g00975 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00871 Bpe-Chr3:28466255 Bpe04g00902 Bpe-Chr4:6044861 6.90E-45 dispersed
Bpe04g00902 Bpe-Chr4:6044861 Bpe09g00270 Bpe-Chr9:2009553 3.07E-45 dispersed
Bpe04g00902 Bpe-Chr4:6044861 Bpe05g00975 Bpe-Chr5:22602529 5.02E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1241 Blo01g00195 . Bda03g00975 . Bpe04g00902 . . . Cmo08g00198 Cmo17g00588 . . . . . . . . . . . . . . Cla06g00088 Cam06g0132 . . Clacu06g0097 Cmu06g0095 Cre06g0866 . . Cone18ag0848 . . . . . . Blo07g00112 . . Bpe05g00975 . . Bma06g01437 . . . . Cma17g00607 Car08g00177 Car17g00573 . Cpe17g01088 . . . . . . . . . . . . . . . . . Cme11g02456
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01781 . 1 376 Orphan Transcription Factor Family AT5G61850 61.8 8.2e-121 430.6
Bpe15g01214 . 1 304 Orphan Transcription Factor Family AT5G61850 57.9 8.8e-83 304.3
Bpe04g00902 CCT 1 157 Orphan Transcription Factor Family AT1G06040 64.3 2.3e-53 205.3
Bpe05g00975 CCT 1 153 Orphan Transcription Factor Family AT1G06040 63.1 1.7e-51 199.1
Bpe09g00270 . 1 110 Orphan Transcription Factor Family AT1G06040 64.5 1.4e-37 152.9
Bpe03g00871 . 1 106 Orphan Transcription Factor Family AT1G06040 66.0 2.3e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21284 PF00643 zf-B_box 6.90E-08 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00902 Bpe_Chr04 FPKM 7.518875 9.413218 14.229306 12.881026 5.905974 4.395448 5.603037 12.20233 13.370206 13.202095