Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00903 ATGGCTTTGACTAACGGTTCGAGTGCTTGCGGCTTGATTGTTAGCTTCGGAGAGATGCTGATCGATTTTGTTCCTACCGTTTCCGGCGTCTCCTTGGCTGAAGCCCCTGGCTTTCTCAAGGCTCCAGGTGGCGCTCCGGCCAATGTTGCGATCGCCGTGAGCAGACTGGGAGGCAAAGCGGCTTTCGTCGGAAAGCTTGGAGACGATGAATTCGGTCACATGCTTGCAGGGATCTTGAAGGAAAACGGCGTCTCCGGTGACGGGATCAGCTTCGACGAGGGCGCCAGAACTGCGTTGGCGTTCGTCACTCTTCGGGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAATCCTAGCGCCGATATGTTGCTGAAGCCGGAAGAGCTAAATCTGGAGCTGATCAGATCCGCCAAAGTGTTTCACTACGGATCCATCAGCTTGATCGTGGAGCCATGCAGATCGGCGCATATGAAGGCTATGGAGGTGGCAAAGGACGCCGGGGCCCTTCTCTCATACGACCCTAACCTCCGTCTACCTTTATGGCCTTCGCCTGAGGAGGCTCGCGAGCAGATTTTGAGCATATGGGACAAGGCGGAAGTTATCAAGGTTAGCGACGTTGAGCTGGAGTTCCTTACCGGAAGTGACAAAATCGACGATGAATCCGCTTTGTCACTGTGGCATGATAATCTCAAGCTCCTCCTCGTCACTCTCGGCGAGCATGGCTGCAGATACTACACCAAGGCTTTCCGTGGATCTGTGGAGGCTTTCCACGTGAAGGCAGTGGACACAACTGGAGCAGGCGACTCGTTCGTTGGTGCTTTGCTTTGCAAGATTGTCGACGACCAATCCATCCTTGAAGATGAAAAGAGGCTGAGGGAAGTACTGTTGTTTTCCAACGCATGTGGAGCCATTACCACCACCAAAAAGGGGGCCATTCCAGCTCTTCCCACCGAGGCTGATGTCCTCGCCTTGATCAACGGTGGCGCTTAG 990 54.65 MALTNGSSACGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVSRLGGKAAFVGKLGDDEFGHMLAGILKENGVSGDGISFDEGARTALAFVTLRADGEREFMFYRNPSADMLLKPEELNLELIRSAKVFHYGSISLIVEPCRSAHMKAMEVAKDAGALLSYDPNLRLPLWPSPEEAREQILSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHDNLKLLLVTLGEHGCRYYTKAFRGSVEAFHVKAVDTTGAGDSFVGALLCKIVDDQSILEDEKRLREVLLFSNACGAITTTKKGAIPALPTEADVLALINGGA 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6049220 6051535 - Bpe015567.2 Bpe04g00903 102712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00903 329 PANTHER HEXOKINASE FAMILY MEMBER 18 327 - -
Bpe04g00903 329 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 262 275 IPR002173 GO:0016773
Bpe04g00903 329 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 43 67 IPR002173 GO:0016773
Bpe04g00903 329 PANTHER BNAA04G18320D PROTEIN 18 327 - -
Bpe04g00903 329 Pfam pfkB family carbohydrate kinase 12 317 IPR011611 -
Bpe04g00903 329 PRINTS Ribokinase signature 38 57 IPR002139 GO:0016301
Bpe04g00903 329 PRINTS Ribokinase signature 233 244 IPR002139 GO:0016301
Bpe04g00903 329 Gene3D - 11 328 IPR029056 -
Bpe04g00903 329 SUPERFAMILY Ribokinase-like 13 325 IPR029056 -
Bpe04g00903 329 CDD bac_FRK 12 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00903 K00847 E2.7.1.4, scrK; fructokinase [EC:2.7.1.4] - pvy:116135378 596.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00903 Bpe05g00976 CCT
Bpe04g00903 Bpe13g00907 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00325 Bpe-Chr3:4822679 Bpe04g00903 Bpe-Chr4:6049220 1.52E-07 dispersed
Bpe04g00903 Bpe-Chr4:6049220 Bpe10g00903 Bpe-Chr10:14696423 1.81E-43 dispersed
Bpe02g01382 Bpe-Chr2:17414180 Bpe04g00903 Bpe-Chr4:6049220 1.83E-149 transposed
Bpe03g00106 Bpe-Chr3:1606633 Bpe04g00903 Bpe-Chr4:6049220 1.47E-147 transposed
Bpe03g01019 Bpe-Chr3:29620326 Bpe04g00903 Bpe-Chr4:6049220 1.34E-50 transposed
Bpe09g00272 Bpe-Chr9:2021823 Bpe04g00903 Bpe-Chr4:6049220 9.66E-12 transposed
Bpe10g00377 Bpe-Chr10:11346637 Bpe04g00903 Bpe-Chr4:6049220 5.15E-12 transposed
Bpe13g00907 Bpe-Chr13:15088831 Bpe04g00903 Bpe-Chr4:6049220 1.73E-141 transposed
Bpe04g00903 Bpe-Chr4:6049220 Bpe05g00976 Bpe-Chr5:22607354 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1238 Blo01g00197 Blo12g00260 Bda03g00976 . Bpe04g00903 . . . Cmo08g00204 Cmo17g00583 . . . . . . . . . . . . . . Cla06g00083 Cam06g0141 Cec06g0090 Cco06g0087 Clacu06g0090 Cmu06g0088 Cre06g0861 . . . . . . . . . . . . Bpe05g00976 . . . Sed09g0418 . . . Cma17g00603 Car08g00178 Car17g00570 Cpe12g00513 Cpe17g01091 Bhi12g02522 Tan06g1586 Cmetu11g0190 . Hepe03g1051 . . . . . . . . . . . . Cme11g02461
Vvi15g503 . . . . . . Bma04g00865 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag1205 . . . . . . . . Bpe13g00907 Bpe04g00903 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004086 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 2 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00903 Bpe_Chr04 FPKM 0.175674 0.309411 202.916977 189.926132 1.61326 1.515466 1.187582 11.093014 11.95485 11.77117