Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe04g00921 | ATGGGTTTTCCGGTCGGTTATACGGATGTGTTCTTCCCCTATCTCTTTCTTCGCCTACTTTCTCTTCTTGGATACATCAGAAGTCTCATTTCGTCTCTGTTTCACCTTCTGGGTCTCTCTGATTTCATCGAAACAGATGCCGTCTGGCCCGAAAGGCAGAGCCGAATCCCCGATACTCCCTCAGTTTCGGCGCTCCTGATTCGAGAATTGCTACCAGTCATCAAGTTTTCGGAGCTTACAGCAGTCTCCGGCGAAGCAGAGTCACTGGACAGCTGCGCAGTTTGTCTCTTCGAATTTGAAGATGGGGCGGAAATCAGAAGATTAACAAACTGTATGCACATTTTTCACAGAGACTGTTTAGACCGCTGGATGGATCATGATCAGAAAACATGTCCTCTTTGTAGGACGCCATTTTTGGCCGATGAGATGCAGAGAGAGTTCAATCAACGCCTGTGGGCCGCTACCGGAGCATCTGATTTTTACGGTGAATACAGCTAG | 498 | 47.99 | MGFPVGYTDVFFPYLFLRLLSLLGYIRSLISSLFHLLGLSDFIETDAVWPERQSRIPDTPSVSALLIRELLPVIKFSELTAVSGEAESLDSCAVCLFEFEDGAEIRRLTNCMHIFHRDCLDRWMDHDQKTCPLCRTPFLADEMQREFNQRLWAATGASDFYGEYS | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 6147586 | 6148083 | - | Bpe015584.1 | Bpe04g00921 | 102730 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe04g00921 | 165 | SUPERFAMILY | RING/U-box | 74 | 142 | - | - | |
| Bpe04g00921 | 165 | PANTHER | BRH1 RING FINGER PROTEIN | 1 | 165 | - | - | |
| Bpe04g00921 | 165 | SMART | ringv_2 | 91 | 135 | IPR011016 | GO:0008270 | |
| Bpe04g00921 | 165 | Pfam | Ring finger domain | 90 | 135 | IPR001841 | - | |
| Bpe04g00921 | 165 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 139 | IPR013083 | - | |
| Bpe04g00921 | 165 | CDD | RING-H2 | 92 | 135 | - | - | |
| Bpe04g00921 | 165 | ProSiteProfiles | Zinc finger RING-type profile. | 92 | 135 | IPR001841 | - | |
| Bpe04g00921 | 165 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 165 | - | - | |
| Bpe04g00921 | 165 | SMART | ring_2 | 92 | 134 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe04g00921 | Bpe-Chr4:6147586 | Bpe11g00663 | Bpe-Chr11:5093079 | 1.40E-51 | dispersed | |
| Bpe11g00378 | Bpe-Chr11:2864512 | Bpe04g00921 | Bpe-Chr4:6147586 | 5.56E-14 | dispersed | |
| Bpe04g00921 | Bpe-Chr4:6147586 | Bpe05g00997 | Bpe-Chr5:22739853 | 2.02E-96 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe04g00921 | K16281 | - | cpap:110820950 | 246.514 |