Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00952 ATGGCTCATATTCCGGCTAATCACGGGGCCTCCTCCGTTTCTCAACCGGAGACAGGTCTGGAAAAAGATGGTCTGTATTCGGAGCTATGGAAAGCCTGCGCAGGGCCTCTGGTAGATGTTCCTCGCCGAGGAGAAAGAGTTTTCTACTTTCCTCAGGGTCACTTGGAACAATTGGAAGCGTCAATAAATCTGGAGTTGAATCAGAAAATTCCCATTTGTGATCTACCCTCTAAGATTCTCTGTCGTGTCGTCGACACTCAATTGATGGCAGCAAAAGAAACGGACGAAGCTTACGCTCAGATCACTCTGCTCCCAGAACTAGATCAAACCGAGGCTTCAAGCCCGGAACCTGATCCCGTTGAGAATCCGAGAAGTTCTGTGCATTCGTTTTGCAAGATTTTAACGGCTTCAGATACGAGCACTCATGGCGGATTCTCAGTTTTACGTAAACATGCCACCGAATGCCTTCCTCTTCTGGACATGAGCCAACCGACGCCTACCCAAGAATTAGTTGCCAAAGATCTTCACGGGCATGAGTGGAAATTTAAGCATATTTACAGAGGTCAACCGCGGAGGCATTTGCTCACTACTGGATGGAGTACTTTTGTGACTTCCAAGAGACTACTTGCCGGGGACGCCTTCGTGTTTTTAAGGGGCAGTAATGGAGAGTTGAGAGTCGGGGTTTGTCGTCTTGCTCGACAACAGGCTCAGATGCCATCATCTGTGATATCCATTCACAACATGCATCTGGGAGTCCTTGCCACTGCATCTCATGCTTTTAGAACTCAGACCCTTTTTGTTGTCTATTACAAGCCCAGGACAAGCCAATTCATTATTGGTTTCAACAAATACCTAGACTCCATTAAGATTGGGTTTTCGATTGGGATGCGTTTTAAGATGCAGTTTGAAGGAGAGGAATCTTCGAAGAGAAGGTTCACGGGAACTATTGTTGGCATTGGAGACGTTTCTCCTCAGTGGTCCGATTCCAAATGGCGATCGTTGAAGGTTCAATGGGATGAGCCTTCTACTATTCCAAGGCCAGAAAGGGTCTCTTCTTGGGAGATAGAACATTTTGTGCCGCTCTCTTCGTTAAACTTGAGTCAACCTGTGACGAAAAGTAAAAGGGTCCGACCAGTTGAGATTCTAACGTCGGATTTAACTTCTGGTTCTCATGCTTCGCCATTTCGGTATCATGGATCATCTCTTCCCAACTATCATGGATCGACTCTTCCCAACGACATGCCCCAACTGCATAATGTTGCCGAAGTCCATCCGAGACGGACTGAAGTCGATGCCAGTCTTTCTAATGACAGTAAATTTTATGGCTCAAAATCTCAACCTGAAGCTAACTGGCCATCTTCTCCTCGTCTTAGTGTCTCTCTAAACCTTTTCACAAATTCGATAGATGACAAAGTATCTGACCAATCTGGATCCGTTCTCCCCGTCAATGTTTCTTCGACTTCACCGAATCCAAACAATGGCGGTCTTGTAAATAGTCAGTTGGATAATCAGCATACATCAGATGGTTCTGTTTGCTGCCGTTTGTTTGGAATCAATTTGTTAAAGAAATCGAACGGCAACTCAAATATGGAGAAACCCCCACCAAGCAAGCAGGGTAACAATTTGACGTGTAGAATTCGTACAAAGGTTCAAATGCAAGGCTACCCCATTGGTCGTGCTGTCGACTTAGCAGCTCTGCAAGGATATGAACATCTTATAGACGAGCTTGAGAACATATTCGACATTAAAGGAGAGCTTCTTCCACAAGACAAATGGGCAGTGGTCTTTACCGACAATGAGAATGACATGATGCTCGTGGGGGATGATCCATGGCCAGAATTCTGTAAAATGGTGAGAAAAATCTACATATTTTCGAGGGAAGAAGTCAAGAAGATGGGTTCGAAACTGGAGCATCCTCCATTATTGGCAACGTCGTCACTACAAGGTCGAGAGATTGTTAGAAGTTTGGAAACCGAGGAAAGCAAGAAAACTGAGTGA 1998 45.35 MAHIPANHGASSVSQPETGLEKDGLYSELWKACAGPLVDVPRRGERVFYFPQGHLEQLEASINLELNQKIPICDLPSKILCRVVDTQLMAAKETDEAYAQITLLPELDQTEASSPEPDPVENPRSSVHSFCKILTASDTSTHGGFSVLRKHATECLPLLDMSQPTPTQELVAKDLHGHEWKFKHIYRGQPRRHLLTTGWSTFVTSKRLLAGDAFVFLRGSNGELRVGVCRLARQQAQMPSSVISIHNMHLGVLATASHAFRTQTLFVVYYKPRTSQFIIGFNKYLDSIKIGFSIGMRFKMQFEGEESSKRRFTGTIVGIGDVSPQWSDSKWRSLKVQWDEPSTIPRPERVSSWEIEHFVPLSSLNLSQPVTKSKRVRPVEILTSDLTSGSHASPFRYHGSSLPNYHGSTLPNDMPQLHNVAEVHPRRTEVDASLSNDSKFYGSKSQPEANWPSSPRLSVSLNLFTNSIDDKVSDQSGSVLPVNVSSTSPNPNNGGLVNSQLDNQHTSDGSVCCRLFGINLLKKSNGNSNMEKPPPSKQGNNLTCRIRTKVQMQGYPIGRAVDLAALQGYEHLIDELENIFDIKGELLPQDKWAVVFTDNENDMMLVGDDPWPEFCKMVRKIYIFSREEVKKMGSKLEHPPLLATSSLQGREIVRSLETEESKKTE 665
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 6416456 6419741 + Bpe015616.1 Bpe04g00952 102761
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00952 665 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Bpe04g00952 665 Pfam AUX/IAA family 514 630 IPR033389 -
Bpe04g00952 665 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bpe04g00952 665 SUPERFAMILY DNA-binding pseudobarrel domain 121 259 IPR015300 -
Bpe04g00952 665 MobiDBLite consensus disorder prediction 472 502 - -
Bpe04g00952 665 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Bpe04g00952 665 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 531 640 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bpe04g00952 665 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 526 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bpe04g00952 665 SUPERFAMILY CAD & PB1 domains 536 621 - -
Bpe04g00952 665 ProSiteProfiles PB1 domain profile. 545 626 IPR000270 GO:0005515
Bpe04g00952 665 Gene3D - 291 363 - -
Bpe04g00952 665 SMART B3_2 130 232 IPR003340 GO:0003677
Bpe04g00952 665 PANTHER AUXIN RESPONSE FACTOR 11 531 640 - -
Bpe04g00952 665 PANTHER AUXIN RESPONSE FACTOR 11 9 526 - -
Bpe04g00952 665 MobiDBLite consensus disorder prediction 434 456 - -
Bpe04g00952 665 CDD B3_DNA 128 230 IPR003340 GO:0003677
Bpe04g00952 665 Gene3D - 127 231 IPR015300 -
Bpe04g00952 665 Gene3D - 541 633 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Bpe04g00952 Bpe05g01038 CCT
Bpe04g00952 Bpe05g01038 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00952 Bpe-Chr4:6416456 Bpe13g00184 Bpe-Chr13:9759644 1.39E-26 dispersed
Bpe04g00952 Bpe-Chr4:6416456 Bpe05g01038 Bpe-Chr5:22955782 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21288 PF02309 AUX_IAA 1.20E-12 CL0072 Bpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00952 K14486 - qsu:112005008 793.497