Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00972 ATGGATTTTTTGCCAAAAGCAAAAGCGTATTCTGATAGAGAGGAGGAAGAGGAAGAAGAAGAGGTAAAAAGTAGTTCTTCTGCTAGCAAGCTTCCATTTTCTCCTGGCTCTTCATCTTCTCCTTCTGTATATAAGCTATGGCTAGGGAATAGTGAGTCTAAAGAGAAAGTTTCAAGATCTTATCGTATGAATGAACTTTCTTCACCCGAAACCCCCATTAACTGCCACGAGAAGCTTGAGTCGATAGACTTATCGTTGCGAATCGACAGCGACATGGGCGGGGATGTCAATGGAGCTCGAAGCTATGGCCATGGAGGTTGCAGCGAAAGAGAACACATGTTTGATAAAGTAGTGACTCCCAGCGATGTTGGAAAGCTAAATCGTCTAGTAATTCCGAAACAACACGCAGAGAAATACTTCCCCATCGATTCTTCAACAAATGAAAAGGGTTTGATTCTGAATTTTGAAGATAGAAACGGAAAATCATGGCGGTTTCGTTACTCTTACTGGAACAGTAGCCAGAGCTACGTGATGACAAAAGGATGGAGTAGGTTTGTGAAGGAGAAGAAGCTAGACGCCGGGGATGTCGTTTCTTTCGAACGGGGAGTGGGAGAGGTTGGAAAGCATCGTCTCTTCATAGACTGGCGGCGCCGCCCAGATGCGCCACCGAATCTGGCGTCGCTTGTTCATCTTCCTCAGTCTATGAGATGGGGTAGTAGACAGTTGATTCCTCCATCAATGGCGTCGCCTTATCCTCATCCGTACCGCCATTTTCAAAACCTTAATTACGGTACGATCAATCCGTCTTACTATCAGAGAGGAGCTTCCGACCACTTCCATGGAGGAAGCTTCGAATCGGGTCCTGTTTATTACTTAAGGCCGTCTTCTTCTTACACCATCGGAGCACTGCAACAAGGTGGGGAAGCTGCTCCAATGGTGATCGATTCAGTACCAGTAGCCCACCAAGGAAAATCTAAACCTAAACGCCTAAGACTGTTTGGTGTGAATTTGGAGTGTCCAGTACCAGAAGAACCCATTAATAATCCTCATTTTGCAAGCTCTTCTTCAGTTCCTTATGTTCAATTGCGGCCGCCATTTTCAACTGAGTTCTCAGCAAGAGGAAAAGGTTCGTCCTCGTTCGATTGGAATCTGCCATGA 1158 45.68 MDFLPKAKAYSDREEEEEEEEVKSSSSASKLPFSPGSSSSPSVYKLWLGNSESKEKVSRSYRMNELSSPETPINCHEKLESIDLSLRIDSDMGGDVNGARSYGHGGCSEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPIDSSTNEKGLILNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFERGVGEVGKHRLFIDWRRRPDAPPNLASLVHLPQSMRWGSRQLIPPSMASPYPHPYRHFQNLNYGTINPSYYQRGASDHFHGGSFESGPVYYLRPSSSYTIGALQQGGEAAPMVIDSVPVAHQGKSKPKRLRLFGVNLECPVPEEPINNPHFASSSSVPYVQLRPPFSTEFSARGKGSSSFDWNLP 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6672978 6674135 + Bpe015638.1 Bpe04g00972 102781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00972 385 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 68 353 - -
Bpe04g00972 385 ProSiteProfiles B3 DNA-binding domain profile. 114 219 IPR003340 GO:0003677
Bpe04g00972 385 CDD B3_DNA 112 201 IPR003340 GO:0003677
Bpe04g00972 385 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 68 353 IPR044800 GO:0003700
Bpe04g00972 385 MobiDBLite consensus disorder prediction 26 44 - -
Bpe04g00972 385 SUPERFAMILY DNA-binding pseudobarrel domain 110 220 IPR015300 -
Bpe04g00972 385 Pfam B3 DNA binding domain 114 218 IPR003340 GO:0003677
Bpe04g00972 385 SMART B3_2 114 219 IPR003340 GO:0003677
Bpe04g00972 385 MobiDBLite consensus disorder prediction 1 44 - -
Bpe04g00972 385 Gene3D - 107 224 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g00972 Bpe13g00799 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00972 Bpe-Chr4:6672978 Bpe08g00913 Bpe-Chr8:11582969 2.95E-92 dispersed
Bpe08g00492 Bpe-Chr8:3216966 Bpe04g00972 Bpe-Chr4:6672978 6.54E-06 dispersed
Bpe04g00972 Bpe-Chr4:6672978 Bpe11g00381 Bpe-Chr11:2890171 6.50E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21293 PF02362 B3 6.70E-30 CL0405 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00972 - - vvi:100259130 359.377