Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00977 ATGTTTTACGAGATGCAGCGATGTAGTGTTTCGCCGGATGATTATACACTGGCGACGATGGCGAAAGTGTGTAGCGAGGGCGGGGGATTGGAAGTCGGAGAAGTGATACATGGGATGAGCGTAAAACTTGGTTTTGCTATGGATGTTGTTGTTGCTAATTCCCTGATGTCAATGTACTGCAAGTGCGGTGATTTCGAGGTTGCCCGGAAACTGTTCGATGAAATTCCTGTTAGAAACTCAGGTTCTTGGAATGTGCTTCTAGCTGGATATGCGAGCTTTTCTGATTGCAGATATCATGAGAAAATTTGGGAAACCGTAAAGCATATGCAAATTGATGGTATAAAACCTGATACATTTACTCTGTCTATTGTTTTGCCTTTTTGTGGTGGTAATACTGAGAGATGGGATTATGGGAAAGAGCTTCATTGTTATATTTTGAAGAGAGAATTTGATTTTTATTATCGTTCGAATGTTCATCTGGGTTCTTGTCTGATTGATATGTATTCAAAGAACAATAATGTCACTAAGAGTAGACGGGTCTTTGAGCAAATGAGGAGTACAAATGTTTATATTTGGGTGGCTATGATTGGAGGTTACATCCGTAATGGCGAATCAGATGAGGCGATGATTCTTTTTCGTGATATGCAAGGGAAAGACAGGATAGAACCAAGTAGAGTCTCTATAGTGACTATTTTGCGAGCTTGTAGCTCCCAAGCAGGCCTAATGAATGGGAAACAAATTCATGGATTCACTCTGAGAAAAGAATTGAATGATGATGTATCGTTGTGTAATTCTTTAATCGATATGTATTGCAAGTGTGGAAATTCAGTTTATGCAAGAAGAGTTTTTGACGATTCATCTTTTTTGAGGGACACAATCTCTTGGACAACCATGATTTCTGGGTATGGACTCCACGGACAGGGTGAGGAAGCCATTTTTTTGTTCAATCAGATGATCCACCTTCGTCTAAAACCGGACACAATAACGATAGTGGGGGTTTTGTCAGCCTGTGGAAGATCGGGTTTGGTAGATGAAGGACTCAATATTTACAACAAAGTGCTAAACGAATTAGGAATTGAACCAACGACCGAGATTTGCGCAACCGTGGTTGATATGGTGGCACGATCAGGACAGCTCAATCTGGCGTTAGATTTCATCAAAACAATGCCTGTCAAACCAGGGCCTACTATTTGGGGAGCTCTTCTCACTTCTTCTTTGAATCATGGTAATTCAGAGATGCAAGAACTGGCTTATAAATTCCTCATTGAGCTCGAACCTCAAAACCCGTCAAATTTTGTTTTGTTATCAAACTTACACGCTTCTTCCAGTAGATGGGAAGTGGTGTCCCAAGTCAGAAAAGCCATGAAAGAAAGAGGTTTGAAAAAGGTAGCTGGGTGTAGTTGGATAGCCGTCAACTGCAATACTCACTGCTTCCACGTTGCAGATAAAACTCATCCTTATTCCGAGTCAATTTATGAAGCTGTTGATAGCCTTGTTTTCACTATGAAGGGATCAGAGTCTGCAGTTGATTTTGAAATACTTGGTTTGACAGCTCAAACATGA 1563 40.75 MFYEMQRCSVSPDDYTLATMAKVCSEGGGLEVGEVIHGMSVKLGFAMDVVVANSLMSMYCKCGDFEVARKLFDEIPVRNSGSWNVLLAGYASFSDCRYHEKIWETVKHMQIDGIKPDTFTLSIVLPFCGGNTERWDYGKELHCYILKREFDFYYRSNVHLGSCLIDMYSKNNNVTKSRRVFEQMRSTNVYIWVAMIGGYIRNGESDEAMILFRDMQGKDRIEPSRVSIVTILRACSSQAGLMNGKQIHGFTLRKELNDDVSLCNSLIDMYCKCGNSVYARRVFDDSSFLRDTISWTTMISGYGLHGQGEEAIFLFNQMIHLRLKPDTITIVGVLSACGRSGLVDEGLNIYNKVLNELGIEPTTEICATVVDMVARSGQLNLALDFIKTMPVKPGPTIWGALLTSSLNHGNSEMQELAYKFLIELEPQNPSNFVLLSNLHASSSRWEVVSQVRKAMKERGLKKVAGCSWIAVNCNTHCFHVADKTHPYSESIYEAVDSLVFTMKGSESAVDFEILGLTAQT 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6761963 6763525 - Bpe015643.1 Bpe04g00977 102786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00977 520 TIGRFAM PPR: pentatricopeptide repeat domain 162 190 IPR002885 -
Bpe04g00977 520 TIGRFAM PPR: pentatricopeptide repeat domain 293 327 IPR002885 -
Bpe04g00977 520 TIGRFAM PPR: pentatricopeptide repeat domain 190 223 IPR002885 -
Bpe04g00977 520 TIGRFAM PPR: pentatricopeptide repeat domain 52 75 IPR002885 -
Bpe04g00977 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 218 IPR002885 -
Bpe04g00977 520 PANTHER OS07G0578800 PROTEIN-RELATED 2 504 IPR045215 GO:0003723|GO:0009451
Bpe04g00977 520 PANTHER OS07G0436600 PROTEIN 2 504 - -
Bpe04g00977 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 361 IPR002885 -
Bpe04g00977 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 48 82 IPR002885 -
Bpe04g00977 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Bpe04g00977 520 Pfam E motif 408 469 IPR046848 -
Bpe04g00977 520 Pfam PPR repeat 51 77 IPR002885 -
Bpe04g00977 520 Pfam PPR repeat 263 284 IPR002885 -
Bpe04g00977 520 Pfam PPR repeat 162 186 IPR002885 -
Bpe04g00977 520 Gene3D Tetratricopeptide repeat domain 133 249 IPR011990 GO:0005515
Bpe04g00977 520 Gene3D Tetratricopeptide repeat domain 30 132 IPR011990 GO:0005515
Bpe04g00977 520 Gene3D Tetratricopeptide repeat domain 264 512 IPR011990 GO:0005515
Bpe04g00977 520 Pfam PPR repeat family 188 236 IPR002885 -
Bpe04g00977 520 Pfam PPR repeat family 291 337 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00977 - - - jre:109010424 674.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00977 Bpe-Chr4:6761963 Bpe08g00298 Bpe-Chr8:1790897 8.39E-14 dispersed
Bpe04g00977 Bpe-Chr4:6761963 Bpe02g01078 Bpe-Chr2:13895334 2.56E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g805 . . Bda03g01102 . Bpe04g00977 . Bma04g01027 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0193 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008407 1 5 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00977 Bpe_Chr04 FPKM 0.377071 0.198902 0.755913 1.103494 0.768781 0.412325 0.739957 0.628936 0.400804 0.564512