Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00979 ATGGCACAAACAGCAGGAAGAAAGATTGTTTCCCCACTTCTGTTTCTGAACTTGATCATGTACATTATCATCATCGATTTTGCCAGTTGGAAGATGTTGGGCATCTGCCACATCAGAGCATGGAGAAGCGACAGCCTGGCCGGAGCCGGTTCTTCCTCCATAATCGCATGGGCTTTGACCGCTTTTGCCTTTGGGTTGGCTTGCAAGGAAATCAATTTAAGAGGGTGGAGGCTGAGAGTTTTGGAAGTGTTCATAATAATATTAACGTTCACTCAACTTTTGTACTTTCTGCTGGTTCATGCCGAGATGTATAGCAGTTACTACAGACCTGGCTACCAAGACACAGACTATGGCATGAGAACTAGTGCGCCGGGGGCTGAGCCAGTGGAGAAGGGTGGCAGGCAAGTTAGGATCTAA 417 47.24 MAQTAGRKIVSPLLFLNLIMYIIIIDFASWKMLGICHIRAWRSDSLAGAGSSSIIAWALTAFAFGLACKEINLRGWRLRVLEVFIIILTFTQLLYFLLVHAEMYSSYYRPGYQDTDYGMRTSAPGAEPVEKGGRQVRI 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6784908 6788613 - Bpe015645.1 Bpe04g00979 102788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00979 138 PANTHER AWPM-19-LIKE FAMILY PROTEIN 31 127 IPR008390 -
Bpe04g00979 138 PANTHER AWPM-19-LIKE FAMILY PROTEIN 1 32 - -
Bpe04g00979 138 PANTHER AWPM-19-LIKE FAMILY PROTEIN 31 127 - -
Bpe04g00979 138 Pfam AWPM-19-like family 32 101 IPR008390 -
Bpe04g00979 138 PANTHER AWPM-19-LIKE FAMILY PROTEIN 1 32 IPR008390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00979 - - - zju:107409403 166.007
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00979 Bpe05g01113 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00979 Bpe-Chr4:6784908 Bpe11g01111 Bpe-Chr11:8311998 2.55E-18 dispersed
Bpe04g00979 Bpe-Chr4:6784908 Bpe05g01113 Bpe-Chr5:23505583 2.06E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g801 . . . Bda08g00008 Bpe04g00979 . . Bma05g01259 . Cmo17g00133 . . . . . . . . . . . . . . Cla06g00705 Cam06g0755 Cec06g0761 Cco06g0773 Clacu06g0746 Cmu06g0729 Cre06g1506 . . . . . Csa02g01019 Chy05g00283 . . . . . Bpe05g01113 . . . . . . . Cma17g00130 . Car17g00116 Cpe12g00114 . . . . . . . . . . . . . . . Lsi09g01188 . . Cme05g00626
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009264 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00979 Bpe_Chr04 FPKM 485.792297 587.715393 6.413123 5.164445 0.0 0.0 0.0 0.0 0.0 0.0