Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00980 ATGGTTTCCGCCATTTTCAGAAGCATTCAAGCCAACCCTTTATTGCTTTACTCCACTTCGTTGTTTACCAGAAGAAATGGAGTTTTATTTTGCACCATGAACAGCACCCAAATTCACACAGCCACCGAGCAGAAGCAAAAGCCTCCAACAAAACCTTCTCTACTTACCCAGAATAAAACAATTGATTCAGTCTCCAAAAATTATGAAGCAGTTATTGGTATAGAAACTCATGTTCAGCTCTCAACTCATACTAAGGCTTTCTGCAGCTGTCCCTACAGTTACGGCTCTCTGCCAAACACAAACATCTGCCCCATTTGCATGGGCCTTCCCGGAGCTTTACCGGTTTTAAACTCGAAGATGATAGAATTTGCAGTGAAACTGGGACTAGCTCTTAATTGTAATTTGGCTTTCAACTCCAAATTTGATAGGAAACAATATTTTTATCCTGACCTTCCAAAAGGGTATCAAATTTCTCAATTTGATATCCCAATTGCATCTGGTGGTTATCTTGATTTGGATCTTCCCCTTGAGTATGGTGGAGGCCATAGGAGATTTGGAATTACCAGGGTCCACATGGAAGAGGATGCTGGCAAGCTGCTTCACTCGGAAAGTGATAGTTATTCTCAGGTTGACTTGAATAGAGCAGGAGTTCCCTTGCTTGAGATTGTTTCTGAACCGGATATGAGAAGTGGAATTGAAGCTGCAGAGTATGCAGCGGAGATTCAGAGGTTGGTTCGGTATTTAGGGGTGAGCAATGGAAACATGCAAGAAGGTTCGCTTCGCTGTGATGTCAACGTCTCGGTTCGACCTATGGGACAAATTCAGTTTGGAACAAAGGTAGAGATAAAAAATTTGAACTCGTTTTCATCGGTGAGTAGAGCAATAGACTTTGAGATCTCCAGGCAGGTACTTCTCCATAGTCAGGGCCAGACAGATCAAATTGTTCAAGAGACTCGCCTTTGGGATGAAAGTACTCAGAAAACAGTGACCATGAGGAAAAAGGAAGGACTTTCTGACTATCGATATTTCCCTGAACCGGACCTACCACAAGTTACCCTTAATAGTGAATATGTTGACAGCATTCGCGGGTCTTTGCCGGAACTTCCTGAAATGAAGCGCCGTCGGTACGAGAAGATAGGCTTAAGCATGCAAGACATACTTTTTCTTGCAAATGACATCCATGTGGCAGAATATTTTGATGAAACTATTGCAAAGGGTGCCGAAGTGAAGCTTGTGGCCAACTGGATAATGGGTGATATAGCAGCTTACATGAAGAATGAGAAGTTAACCATAAATGAGATTAAACTTAGCCCACAAGAGCTGTCTGAGTTGATAGCATCGATAAAAAGTGGCACTATTAGTGGGAAGATCGGCAAAGAGATTCTTTTTGATCTACTGGCTAAAGGTGGAACCGTGCAAGGGCTAATAGCAGAAAAAGATTTAGTCCAGATAGTAGATCATGCCGAAATAGAAAGAATGGTAGATCAAGTTATATCAGAGAATCCGAAACAACTCGAACAATATCGAGGAGGGAAGACCAAGTTACAAGGTTATTTTGCTGGGCAGGTCATGAAAGCATCAAAGGGTAAAGCAAATCCTGGTCTTCTAAACAAGATCCTATTAGACAAGCTGAATGCCAAAAGCTGA 1647 42.08 MVSAIFRSIQANPLLLYSTSLFTRRNGVLFCTMNSTQIHTATEQKQKPPTKPSLLTQNKTIDSVSKNYEAVIGIETHVQLSTHTKAFCSCPYSYGSLPNTNICPICMGLPGALPVLNSKMIEFAVKLGLALNCNLAFNSKFDRKQYFYPDLPKGYQISQFDIPIASGGYLDLDLPLEYGGGHRRFGITRVHMEEDAGKLLHSESDSYSQVDLNRAGVPLLEIVSEPDMRSGIEAAEYAAEIQRLVRYLGVSNGNMQEGSLRCDVNVSVRPMGQIQFGTKVEIKNLNSFSSVSRAIDFEISRQVLLHSQGQTDQIVQETRLWDESTQKTVTMRKKEGLSDYRYFPEPDLPQVTLNSEYVDSIRGSLPELPEMKRRRYEKIGLSMQDILFLANDIHVAEYFDETIAKGAEVKLVANWIMGDIAAYMKNEKLTINEIKLSPQELSELIASIKSGTISGKIGKEILFDLLAKGGTVQGLIAEKDLVQIVDHAEIERMVDQVISENPKQLEQYRGGKTKLQGYFAGQVMKASKGKANPGLLNKILLDKLNAKS 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6794769 6797975 + Bpe015646.1 Bpe04g00980 102789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00980 548 Pfam GatB domain 397 544 IPR018027 GO:0016884
Bpe04g00980 548 Hamap Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 67 545 IPR004413 GO:0016884
Bpe04g00980 548 ProSitePatterns Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 212 226 IPR017958 GO:0016884
Bpe04g00980 548 Gene3D - 366 420 IPR042114 -
Bpe04g00980 548 SUPERFAMILY Glutamine synthetase/guanido kinase 69 366 IPR014746 GO:0003824
Bpe04g00980 548 SMART gatb_yqey_2 397 544 IPR018027 GO:0016884
Bpe04g00980 548 TIGRFAM gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 67 545 IPR004413 GO:0016884
Bpe04g00980 548 PANTHER GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED 57 546 IPR017959 GO:0016884
Bpe04g00980 548 Pfam GatB/GatE catalytic domain 71 358 IPR006075 GO:0016874
Bpe04g00980 548 SUPERFAMILY GatB/YqeY motif 367 470 IPR003789 GO:0016884
Bpe04g00980 548 Gene3D - 484 546 IPR023168 -
Bpe04g00980 548 PANTHER GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B, MITOCHONDRIAL 57 546 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00980 K02434 gatB, PET112; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] - qsu:111996535 918.302
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g797 . Blo12g00135 . . Bpe04g00980 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0187 . . . . . Chy05g00285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme05g00623
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007728 1 2 1 1 1 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00980 Bpe_Chr04 FPKM 1.488281 0.882733 0.0 0.229829 0.0 0.0 0.170426 0.0 0.0 0.0