Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00983 ATGGCTGAGTTTGAACAAGGGTTGGTGGAAGAACTGCCGGAGGTAACTGATGAAGTGGTGGTTGTTGAAGAAAAGGCGATTACTGCTTCCACGAAACTTTACTTTGGGAATTTGCCTTATAGCGTTGATAGTGCGCAGCTTGCTGCTGTGATTCAGGACTACGCTAGCCCTGAGATGATTGAGGTTCTTTATAACAGAGACACCGGCAGAAGTAGAGGATTTGCTTTTGTTACAATGAGTAGTATCGAAGATTGTAACAATGTTATCAAAAATCTCGATGGAAATGTCTATATGGGAAGAACGTTGAGGGTGAATTATTCAGATAAACCGAAACCCAAAGAACCTTTATATCCAGAAACTGAGTTTAAGCTTTTCATCGGGAATTTATCGTGGTCTGTCACGTCGGAGAGCTTAACGCAAGCTTTCCAAGAATATGGGAATGTGGTTGGAGCGAGGGTTTTATACGACGGCGAAACAGGAAAATCTCGTGGATATGGATTCGTAAGCTACTCGACAAAAGCAGAGATGGAAAGTGCCCTTGAGTTTCTCAATGGAATGGAACTAGAAGGAAGGGCAATACGGGTGAGCTTGGCGGAAGGGAAACGAGCTCAGGGCGGCTAA 621 44.12 MAEFEQGLVEELPEVTDEVVVVEEKAITASTKLYFGNLPYSVDSAQLAAVIQDYASPEMIEVLYNRDTGRSRGFAFVTMSSIEDCNNVIKNLDGNVYMGRTLRVNYSDKPKPKEPLYPETEFKLFIGNLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVSYSTKAEMESALEFLNGMELEGRAIRVSLAEGKRAQGG 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6811092 6812959 - Bpe015649.1 Bpe04g00983 102792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00983 206 PANTHER TRANSFORMER-2-RELATED 21 70 - -
Bpe04g00983 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 194 IPR000504 GO:0003723
Bpe04g00983 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Bpe04g00983 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Bpe04g00983 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Bpe04g00983 206 SUPERFAMILY RNA-binding domain, RBD 117 202 IPR035979 GO:0003676
Bpe04g00983 206 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 67 106 - -
Bpe04g00983 206 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 21 70 - -
Bpe04g00983 206 PANTHER TRANSFORMER-2-RELATED 67 106 - -
Bpe04g00983 206 PANTHER TRANSFORMER-2-RELATED 113 202 - -
Bpe04g00983 206 Gene3D - 112 206 IPR012677 -
Bpe04g00983 206 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 113 202 - -
Bpe04g00983 206 SUPERFAMILY RNA-binding domain, RBD 26 113 IPR035979 GO:0003676
Bpe04g00983 206 Gene3D - 10 111 IPR012677 -
Bpe04g00983 206 SMART rrm1_1 32 105 IPR000504 GO:0003723
Bpe04g00983 206 SMART rrm1_1 123 196 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00983 - - - mnt:21412097 316.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00698 Bpe-Chr4:4473184 Bpe04g00983 Bpe-Chr4:6811092 2.48E-49 dispersed
Bpe04g00983 Bpe-Chr4:6811092 Bpe12g00676 Bpe-Chr12:12397304 6.38E-14 dispersed
Bpe02g00125 Bpe-Chr2:866062 Bpe04g00983 Bpe-Chr4:6811092 1.24E-07 transposed
Bpe03g01188 Bpe-Chr3:30798177 Bpe04g00983 Bpe-Chr4:6811092 1.88E-44 transposed
Bpe04g00968 Bpe-Chr4:6611108 Bpe04g00983 Bpe-Chr4:6811092 8.91E-15 transposed
Bpe06g00645 Bpe-Chr6:17158586 Bpe04g00983 Bpe-Chr4:6811092 3.89E-13 transposed
Bpe08g00829 Bpe-Chr8:10390137 Bpe04g00983 Bpe-Chr4:6811092 1.38E-08 transposed
Bpe14g01028 Bpe-Chr14:7641928 Bpe04g00983 Bpe-Chr4:6811092 1.57E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g784 . . Bda03g01097 . Bpe04g00983 . Bma04g01022 . . . . Cma14g01844 . . . Cpe08g00361 Cpe03g01544 . . . . . . . . . . . . . . Cone14ag0183 Cone15ag0192 . . Lsi05g01774 . . Cme06g00447 . . . . . . . . . Cmo06g01297 Cmo14g01887 . . . . . . . . . . . . . Cla05g00406 Cam05g0443 Cec05g0451 Cco05g0451 Clacu05g0440 Cmu05g0418 Cre05g0480 . Csa03g01166 Chy06g00428 .
Vvi15g547 . . . Bda08g00359 . . . Bma05g00966 Cmo08g00901 Cmo17g00017 . . . . . . . . . . . . . . . . . . . . . Cone14ag0326 Cone15ag0355 . . . . Chy11g02011 . . . . . . Bpe04g00983 . . . . . Cma08g00933 Cma17g00014 Car08g00813 Car17g00015 Cpe17g00339 Cpe12g00013 . . . . . . . Cla06g00008 Cam06g0219 Cec06g0010 Cco06g0010 Clacu06g0009 Cmu06g0009 Cre06g0784 Lsi09g01933 . . Cme11g02546
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012811 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 2 1 1 1 1 1 0 1 1 1 0 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00983 Bpe_Chr04 FPKM 94.061691 93.259575 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0