Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01000 ATGGCGAGGAGGTTTTTGATGAATGAGGAGTGCGATCCCGCTCCAATTACCTGGAATTTACCATCGTTTGCCATGGAAATCCAGAAAAATGACCCGAATTATGAGTTTGATCAGCTTCAGAGTGGTTTTTTCTGGCCAAATTCAGTGGAACAGAGTGATCCTCTTGACCCTGCTTTTGGCTCCATTGTTTGTTCCCAGGCAGGGTCAAATGCCGGCTTTGCAGTTAACTCTGTCGGAAATAAACTAATGATTAGGGAACTAATCGGAAGGCTGGGAAGCTGTTGCGAACCCGGCGACATTCTGACACCGGCGTACGTTGGGGGAAATACTGAAAGCACCAAATATTCGTCTTGCAGTACGCCATTAAATTCCCCGCCAAAGCTTAATCTATCAGTGGAAAAAGACATCAAAGGCAATTCGTCAGTTTATGAAAGGAATTTTCCAGTTTATCCTAGGTCGAAGCTCTTTAGCTCTGACCCTGAGATCGCCGAGAGAGCTGCTGGGTTTTCATGCTTCGCCGCTAGAAATGGAGTACCAGGTAAACAGATTTCAACGATTCGTGAGTTTGAATCTCAAATTGATGAAGATCAAGAGCGAAGAAAAAGCTCGATTGAGTTCAGGACTTCACTTTCTAGTAAGAAATCGAGAAAGCAATCAAGCTCTCCTACCAGGGACACTGCAGAGAGAGGCGATTCTCGAGAGGTATCCTCCTTGTTTCAGCAAATTTCCTACTGCGAAACAGCCATGAAAGAAAAAGATGAAGTTGATCCCAACAACAGAAAAAGGAAATCAAGTTCAAAGGTAAAATCAGAAGAAGCCCCCTCTGGCAAAATCGCCAAGATTGAAGGTAAAAACGAGGAATCAAATCCAGATGATGGAACGAAGACGAAGAAAGAAGCAAATGAAGGTACAAAATCCGGAGAAGATGAAAACCAGAAGAACGCAAAGCTTCCAGACCCTCCAAGGGATTATATCCACGTTCGAGCAAGAAGAGGTCAAGCTACAGATAGCCATAGCCTGGCCGAAAGAGTAAGAAGAGAAAAAATCAGCGAAAGGATGAAGTTCCTTCAACATCTTGTTCCTGGCTGCAACAAGGTGACTAGAAAAGCAGTGGTGCTTGACGAAATTATAAACTATGTTCAATCATTGCAGCGGCAGGTCGAGTGTCTTTCAATGAAGCTGGCATCAGTTAATCCGAGGATGAATTTAGACATGGCAGCTCTTTTGTCCAAGGATGTAAGAAGACCGGCATTAACAACTCCATAG 1266 44.0 MARRFLMNEECDPAPITWNLPSFAMEIQKNDPNYEFDQLQSGFFWPNSVEQSDPLDPAFGSIVCSQAGSNAGFAVNSVGNKLMIRELIGRLGSCCEPGDILTPAYVGGNTESTKYSSCSTPLNSPPKLNLSVEKDIKGNSSVYERNFPVYPRSKLFSSDPEIAERAAGFSCFAARNGVPGKQISTIREFESQIDEDQERRKSSIEFRTSLSSKKSRKQSSSPTRDTAERGDSREVSSLFQQISYCETAMKEKDEVDPNNRKRKSSSKVKSEEAPSGKIAKIEGKNEESNPDDGTKTKKEANEGTKSGEDENQKNAKLPDPPRDYIHVRARRGQATDSHSLAERVRREKISERMKFLQHLVPGCNKVTRKAVVLDEIINYVQSLQRQVECLSMKLASVNPRMNLDMAALLSKDVRRPALTTP 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6981592 6983215 + Bpe015666.2 Bpe04g01000 102809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01000 421 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 333 383 IPR011598 GO:0046983
Bpe04g01000 421 SMART finulus 339 389 IPR011598 GO:0046983
Bpe04g01000 421 Gene3D - 330 404 IPR036638 GO:0046983
Bpe04g01000 421 CDD bHLH_AtBPE_like 323 408 - -
Bpe04g01000 421 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 82 412 IPR024097 GO:0006355
Bpe04g01000 421 MobiDBLite consensus disorder prediction 247 322 - -
Bpe04g01000 421 MobiDBLite consensus disorder prediction 190 322 - -
Bpe04g01000 421 MobiDBLite consensus disorder prediction 190 232 - -
Bpe04g01000 421 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 401 IPR036638 GO:0046983
Bpe04g01000 421 PANTHER TRANSCRIPTION FACTOR BHLH63 82 412 - -
Bpe04g01000 421 Pfam Helix-loop-helix DNA-binding domain 337 384 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01000 Bpe-Chr4:6981592 Bpe13g00756 Bpe-Chr13:14089584 2.56E-96 dispersed
Bpe14g01027 Bpe-Chr14:7638472 Bpe04g01000 Bpe-Chr4:6981592 9.45E-81 wgd
Bpe04g01000 Bpe-Chr4:6981592 Bpe05g01076 Bpe-Chr5:23265050 3.87E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21294 PF00010 HLH 3.50E-06 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01000 - - tcc:18602600 337.806