Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01004 ACGCCATTAATGGGGATAAGCTCACTTCACTTTCTTCTTCTGGCTTTTCCGGTGCAGAGCCACATCAACCCAGCTCTTGAATTTTCCAAGCGCCTTATTCGCCTCGGTGCCACAGTCACGTTTGCCACTAGTGTCTCCGCTGGCCGGAGATTGAGCAAAGCCCGGCATCTCGACGGCTTGACATTCGCAAGTTTCTCCGATGGATACGACGACGGGATGAGAACCGGCGACGACGTTCAGCAATACTTATCGGAGCTGAGACGTCGCGGCTCCCAAACTCTCGCTGAACTCATCGTTTCTGGAGAGAAAACCGGCCATCCAGTCTCGTGCTTAGTGTACACCCTCACCTTGCCATGGGCAGCCGAGGTGGCAAGTGAACACCACGTTCCATCAGCGCTGCTCTGGATTCAACCCGCCACAGTCTTCGACATCTACTATTACTACTTCAATGGCCACGAGGACGTCTTCAAGAAAGAAAACAACGATCTGACGTCGTCTTTCATCGAATTACCAGGTCTACCACTGTTGACGATCCGCGACGTTCCGTCTTTCTTGACCCCTACGAACCTCTACGCTTTCGGAATTCCATTTTTCAAAGAGCAGATCGAGCTTCTGACCAGAGAGAAAAACCCAACAATATTAGTAAACAGTTTCGACGCTTTAGAATTTGAAGCACTCAGAGCTGTAAAGACAGTCGAATTAACTCCGGTTGGGCCATTGATTCCGTCTGCTTTTTTGGATAAAAGATATTCCTTTGATACTTCATTCGGAGGTGATCTTTTCCACAGCGAAAATGACTACATAGATTGGCTAAACTCTAAACCATCTTCTTCGACTGTTTACGTATCGTTCGGAAGCATTTCTGAGCTGTCGAACAAGCAGAACGAAGAAATCGCGGCTGCGTTGTTGGATTCCGGTTATCCATTCTTGTGGGTAATAAGAAAAAAGGAAAAGACTGTAGAGGGGAGAGAAAAAGCAGGAGAGAAAAAGTGGAGGTGTTCGGAGGAATTACAAAAGCAAGGGAAAATAGTTCCATGGTGCTCTCAGGTGGAGGTCCTATCTCACAGCTCAGTGGGCTGTTTCGTGAGCCACTGCGGGTGGAATTCGACGATGGAGAGCTTAGTCGCCGGCAAACCGGTGGTTGGATTTCCGCAGTGGACGGACCAATGCACGAACGCGAAGCTTTTGGAAGACGAGTGGAGAACGGGAGTAAGGGTGAAGGTTGGTGCAGAAGGGGTGGTTGAGAGGGAAGAGATAAGGAGGTGTTTGGAAATCGTCATGGGAGATGGCGAAAGAGGGTTGGAAGTGAAGAAAAATGCAGAGAAATGGAAAGAGTTGGCCATGGAAGCTGGGAGAGATGGTGGCTCTTCAGATTTGAAACTCAAGGGTTTCATTAATAAGATTTCTGAAGGTCGTCTAGCTAAAAGAATGGCACAATTGAAATGA 1446 48.27 TPLMGISSLHFLLLAFPVQSHINPALEFSKRLIRLGATVTFATSVSAGRRLSKARHLDGLTFASFSDGYDDGMRTGDDVQQYLSELRRRGSQTLAELIVSGEKTGHPVSCLVYTLTLPWAAEVASEHHVPSALLWIQPATVFDIYYYYFNGHEDVFKKENNDLTSSFIELPGLPLLTIRDVPSFLTPTNLYAFGIPFFKEQIELLTREKNPTILVNSFDALEFEALRAVKTVELTPVGPLIPSAFLDKRYSFDTSFGGDLFHSENDYIDWLNSKPSSSTVYVSFGSISELSNKQNEEIAAALLDSGYPFLWVIRKKEKTVEGREKAGEKKWRCSEELQKQGKIVPWCSQVEVLSHSSVGCFVSHCGWNSTMESLVAGKPVVGFPQWTDQCTNAKLLEDEWRTGVRVKVGAEGVVEREEIRRCLEIVMGDGERGLEVKKNAEKWKELAMEAGRDGGSSDLKLKGFINKISEGRLAKRMAQLK 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7013803 7015248 + Bpe015671.1 Bpe04g01004 102813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01004 481 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 9 467 - -
Bpe04g01004 481 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 270 427 IPR002213 GO:0008194
Bpe04g01004 481 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 9 468 - -
Bpe04g01004 481 ProSitePatterns UDP-glycosyltransferases signature. 346 389 IPR035595 -
Bpe04g01004 481 Gene3D Glycogen Phosphorylase B; 14 460 - -
Bpe04g01004 481 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 9 467 - -
Bpe04g01004 481 CDD GT1_Gtf-like 9 451 IPR002213 GO:0008194
Bpe04g01004 481 Gene3D Glycogen Phosphorylase B; 255 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01004 - - - vvi:100260080 597.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01004 Bpe-Chr4:7013803 Bpe05g00383 Bpe-Chr5:18044560 8.71E-97 dispersed
Bpe14g01023 Bpe-Chr14:7602964 Bpe04g01004 Bpe-Chr4:7013803 2.64E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g984 . . . . Bpe04g01004 . . . . . Cma06g01743 . Car06g01478 . . Cpe08g00119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002292 1 2 2 2 2 2 0 2 2 1 2 2 2 1 2 4 2 8 2 2 1 3 1 1 1 2 1 1 1 8 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01004 Bpe_Chr04 FPKM 15.980967 18.791519 33.23494 31.485924 24.914747 23.953766 23.22126 8.199338 7.318065 8.654899