Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01006 ATGCTCATCTCTTCCTATCTTCAACAGCTTCAAGTCTGTGCAAGAACCAGAACCTTGTATTCGGCAAGAAAACTCCATGGTCAGATAATCAAAGCTGGGTTAGCCCAATGCTTGCCTATATCGAATGCCCAGTTAGATGTGTATGGCAAATGTGCTCTCTGGCAAGATGCCACTCAGGTATTCGACGAAATGCTCCACAGAGATCATGTTACGTGGGCTTCTATTCTTACTGCCCACAACCTTGTCAACCATCCGGAAAAGACCCTCTCCTTTTTCCCCGCCATGTCTGCCGCTGATGGTTTGGAGCCTGATCATTTTGTCTTCGCTAGCCTCGTGAAGGCTTGTGCTAGCTTAGGTGTTGTAAGACTAGGTAAACAAGTGCATGCTCGGTTCATGTTGTCTTCGTTTTGTGACGATGATGTTGTTAAATCCTCGTTGGTTGATATGTATGCAAAATGTGGATGTCCAAACGATGCTCGTTCTGTCTTTGATTCGATTTTGGTGAAGAATTCTATTTCTTGGACTGCAATGATTTCTGGGTATGCAAGAACTGGGATGAAATCAGATGCAGTAACAATGTTTCAAAAAATGCCAATACGAAATTTGTTTTCATGGACTGCTTTGATTTCTGGGTTGGTACAGAGTGGGAGCAGCGAGTTTTCATTAAATTTATTCATAGAAATGCGAAGGGAAGACGTTGATATTGTAGACCCGTTAGTTCTTTCAAGCGTTGTTGGTGCTTGTGCTAATTTTGCAGTTTTGGAGCTTGGAAAACAAATTCATGGATTGGTCATAGCTCTTGGCTATGACTCGTGCTTGTTTATAAGCAATGCACTCATCGATATGTATGCTAAATGTAGTAACATCCGAGCAGCAAAATATATTTTTGATGAAATGCAAAGAAGAGATGTGGTATCTTGGACTTCAGTTATAGTTGGGATGGCTCAACATGGGCGGGCACAAGAAGCATTATCTTTATATGATGAGATGGTTTTAGCTGGAACAAAGCCAAATGAGGTGACCTTCGTGGGATTGCTTTATGCTTGTAGTCACGTCGGTTTAGTTGCTAGAGGCCGTCATTTATTCAAGTCAATGGTTAGGGACTATAAAATTAGTCCTTCTCTACAACACTACACTTGCTTTTTGGATCTTCTTAGTCGATCTGGACACCTTGACGAGGCAGAAAGTGTCATTAATGAAATGCCATTTAAGCCCGATGAGCCAACTTGGGCAGCCTTAATTAGTGCTTGTAAGCGTCATGGAAGGACAGAAATGGGAGTTAGAATTGCTGATACTCTATTAAGTTTGGAGCCAGAAGATCCTTCAACTTACATACTTCTTTCTAACATTTATGCTAGTGCTGAAATGTGGGAAAATGTGTCGAAGATAAGAAAGTTAATGGGCGTTATGGATGTTAGAAAAGAACCTGGCTATAGTTACATTGACATATGCAAGGAAAATCAGGTGTTTTATGCTGGGGAGACGACTCATCCAATGAAAGATGAGATTTTTAAGCTGCTTAAGGAGTTGGACGATGAGATGAGAAGAAGGGGTTATGTCCCTGATACAAGCTTTGTTTTACATGACTTGGATCAGCAAGAAAAAGAAAGGCAGCTCTTTTGGCATAGTGAGAGGTTGGCCGTGGCTTACGGACTTCTAAAGGCAGTCAAAGGGACGGTAATTCGAATAGTTAAGAATCTTCGTGTTTGTGGAGACTGTCACACTGTTTTGAAATTCATTAGCGGTATTGTCAAGAGGGAAATTATCGTCCGAGATGCCAATCGGTATCATCATTTCAAGGATGGGAAGTGTTCTTGCAACGATTTTTGGTAA 1833 41.41 MLISSYLQQLQVCARTRTLYSARKLHGQIIKAGLAQCLPISNAQLDVYGKCALWQDATQVFDEMLHRDHVTWASILTAHNLVNHPEKTLSFFPAMSAADGLEPDHFVFASLVKACASLGVVRLGKQVHARFMLSSFCDDDVVKSSLVDMYAKCGCPNDARSVFDSILVKNSISWTAMISGYARTGMKSDAVTMFQKMPIRNLFSWTALISGLVQSGSSEFSLNLFIEMRREDVDIVDPLVLSSVVGACANFAVLELGKQIHGLVIALGYDSCLFISNALIDMYAKCSNIRAAKYIFDEMQRRDVVSWTSVIVGMAQHGRAQEALSLYDEMVLAGTKPNEVTFVGLLYACSHVGLVARGRHLFKSMVRDYKISPSLQHYTCFLDLLSRSGHLDEAESVINEMPFKPDEPTWAALISACKRHGRTEMGVRIADTLLSLEPEDPSTYILLSNIYASAEMWENVSKIRKLMGVMDVRKEPGYSYIDICKENQVFYAGETTHPMKDEIFKLLKELDDEMRRRGYVPDTSFVLHDLDQQEKERQLFWHSERLAVAYGLLKAVKGTVIRIVKNLRVCGDCHTVLKFISGIVKREIIVRDANRYHHFKDGKCSCNDFW 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7028708 7030540 + Bpe015673.1 Bpe04g01006 102815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01006 610 Pfam PPR repeat family 302 349 IPR002885 -
Bpe04g01006 610 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 598 - -
Bpe04g01006 610 TIGRFAM PPR: pentatricopeptide repeat domain 172 198 IPR002885 -
Bpe04g01006 610 TIGRFAM PPR: pentatricopeptide repeat domain 378 402 IPR002885 -
Bpe04g01006 610 TIGRFAM PPR: pentatricopeptide repeat domain 305 339 IPR002885 -
Bpe04g01006 610 TIGRFAM PPR: pentatricopeptide repeat domain 277 305 IPR002885 -
Bpe04g01006 610 Gene3D Tetratricopeptide repeat domain 367 437 IPR011990 GO:0005515
Bpe04g01006 610 Pfam E motif 422 481 IPR046848 -
Bpe04g01006 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Bpe04g01006 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Bpe04g01006 610 Gene3D Tetratricopeptide repeat domain 81 233 IPR011990 GO:0005515
Bpe04g01006 610 Pfam DYW family of nucleic acid deaminases 518 610 IPR032867 GO:0008270
Bpe04g01006 610 Gene3D Tetratricopeptide repeat domain 241 366 IPR011990 GO:0005515
Bpe04g01006 610 SUPERFAMILY TPR-like 146 460 IPR011990 GO:0005515
Bpe04g01006 610 Pfam PPR repeat 203 232 IPR002885 -
Bpe04g01006 610 Pfam PPR repeat 378 401 IPR002885 -
Bpe04g01006 610 Pfam PPR repeat 144 169 IPR002885 -
Bpe04g01006 610 Pfam PPR repeat 172 199 IPR002885 -
Bpe04g01006 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Bpe04g01006 610 PANTHER OS11G0661000 PROTEIN 3 598 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01006 - - - pvy:116131742 944.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01006 Bpe-Chr4:7028708 Bpe10g00099 Bpe-Chr10:1506576 3.84E-32 dispersed
Bpe04g01006 Bpe-Chr4:7028708 Bpe05g00127 Bpe-Chr5:2842824 6.98E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g726 . Blo12g00160 . . Bpe04g01006 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013376 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01006 Bpe_Chr04 FPKM 5.311728 5.027078 34.596115 34.953701 33.581322 29.332621 32.992439 2.308439 2.334908 2.624061