Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01007 ATGGCTACAGATGTGGCGGTGTCGGGCAACGGATTAGTGGGTGAGGGAAAGGTGAGAGCTTGCTGCAAAACAGGGCCTGGATATGCCACCCCTCTGGAAGCGATGTCTGGTCCGAGAGAGGGTCTGATCTATGTCACTGCAGTTTACTCAGGAACAGGGAGAAATAAACCTGATTACTTGGCCACAGTGGATGTAGATCCTAATTCTCCTACTTACTCAAAAGTTATACATCGCTTGCCCGTGCCATATCTAGGCGACGAACTACATCATTCTGGGTGGAACTCGTGTAGCTCCTGTCATGGAGACCCCTCGGCAGCTCGGCAATTTCTAATCCTTCCTTCCCTGTTATCTGGTCGAATATATGCGATCGACACAGTGAGTAATCCGAAGGCACCATCGCTGCACAAAGTCGTCGAACCGAAAGACATCTTACAAAAGACTGGATTGGCTTATCCACATACGTCTCATTGTCTTGCTTCTGGTGAAATTATGGTGTCATGTCTTGGAGATAAAGATGGAAATGCTAAAGGGAATGGGTTCCTTCTCCTCGATTCGGAGTTTAATGTTAAAGGAAGATGGGAGAAACCAGGACACAGTCCCCTGTTTGGATACGATTTCTGGTACCAACCAAGACATAAAACAATGATAAGTACATCGTGGGGCGCTCCCTCTGCTTTCACTGGGGGATTCAACCTCCAACATGTTTCAGATGGTCTCTACGGGAGGCATCTCTACGTCTATAGCTGGCCTGGTGGTGAAATAAAGCAAACTTTGGACCTTGGCAGCACTGGTCTCCTACCGCTCGAGATAAGGTTTTTGCACAATCCTTCAAAAGAAACGGGATTTGTCGGATGCGCATTGTCAAGCAATATGGTGCGATTTTTCAAGACGGAAGATGATTCATGGAGCCATGAGGTTGCGATACCAGTGAAGCCTTTGAAGGTCCAAAATTGGATTCTTCCTGAGATGCCTGGCCTGATTACAGATTTTCTTATCTCGCTCGATGATCGCTTTCTGTACTTTGTTAACTGGCTTCATGGAGATGTCAGACAATATAACATTGAGGACCCTAAGAATCCTGAGTTGACCGGCCAAATCTGGGTTGGAGGACTCATCCAAAAGGGAAGCACGGTAGAGGCCGTGGCTGAAGATGGTAAAACCTTTCAGTTCGAAGTTCCAGAGGTTCAGGGAAAACGTTTGAGAGGGGGGCCTCAAATGATACAATTAAGCTTGGATGGAACAAGACTGTACGTCACAAACTCTCTCTTCAGCACTTGGGACCGTCAGTTTTACCCCGATCTGATCGAGAAAGGGTCCCACATGTTGCAGATCAACGTCGATACAGAGAAGGGAGGCCTCTCCATCAACCCGAATTTTTTCGTTGACTTTGGGGCCGAGCCTGATGGCCCTTCCCTGGCTCATGAGATGAGATATCCTGGAGGAGACTGCACTTCTGATATATGGATTTAA 1470 47.48 MATDVAVSGNGLVGEGKVRACCKTGPGYATPLEAMSGPREGLIYVTAVYSGTGRNKPDYLATVDVDPNSPTYSKVIHRLPVPYLGDELHHSGWNSCSSCHGDPSAARQFLILPSLLSGRIYAIDTVSNPKAPSLHKVVEPKDILQKTGLAYPHTSHCLASGEIMVSCLGDKDGNAKGNGFLLLDSEFNVKGRWEKPGHSPLFGYDFWYQPRHKTMISTSWGAPSAFTGGFNLQHVSDGLYGRHLYVYSWPGGEIKQTLDLGSTGLLPLEIRFLHNPSKETGFVGCALSSNMVRFFKTEDDSWSHEVAIPVKPLKVQNWILPEMPGLITDFLISLDDRFLYFVNWLHGDVRQYNIEDPKNPELTGQIWVGGLIQKGSTVEAVAEDGKTFQFEVPEVQGKRLRGGPQMIQLSLDGTRLYVTNSLFSTWDRQFYPDLIEKGSHMLQINVDTEKGGLSINPNFFVDFGAEPDGPSLAHEMRYPGGDCTSDIWI 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7031918 7034972 + Bpe015674.1 Bpe04g01007 102816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01007 489 PANTHER METHANETHIOL OXIDASE 3 489 IPR008826 GO:0008430
Bpe04g01007 489 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 57 421 - -
Bpe04g01007 489 Pfam 56kDa selenium binding protein (SBP56) 22 489 IPR008826 GO:0008430
Bpe04g01007 489 PANTHER SELENIUM-BINDING PROTEIN 1 3 489 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01007 K17285 SELENBP1; methanethiol oxidase [EC:1.8.3.4] - qsu:112004189 904.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g01007 Bpe13g00561 CCT
Bpe04g01007 Bpe13g00561 ECH
Bpe04g01007 Bpe14g01248 BCT
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g698 . . . . Bpe04g01007 Bpe14g01248 . . . . Cma06g01329 . Car06g01141 . . Cpe08g00331 . . . . . . . . . . . . . . . . Cone15ag0158 Cone7ag0320 Cone4ag0325 Lsi05g01726 . . Cme06g00499 Blo02g00737 Blo07g00257 Bda11g00627 Bda13g00068 . Bpe13g00561 . . . Cmo06g01333 . . . . . . . . . . . . . . Cla05g00450 Cam05g0491 Cec05g0500 Cco05g0499 Clacu05g0486 Cmu05g0463 Cre05g0526 . Csa03g01216 Chy06g00478 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007726 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 2 1 1 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01007 Bpe_Chr04 FPKM 0.160149 0.815642 2.810916 2.977147 381.532349 368.606598 386.559174 0.0 0.0 0.118732