Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01053 ATGTATCGCTTCGCTTCTGGTGTTGTTTCAAAAGCCCGGATCGCGGGAAATAACTCTCAAGTTATTAGTCGGCTGGGTTGGAGTAGAAATTATGCGGCAAAAGACATAAGATTTGGCGTGGAGGCTCGAGCTCTCATGCTTAAGGGAGTAGAGGAACTTGCCGAAGCAGTTAAAGTTACAATGGGTCCTAAGGGACGCAATGTGGTCATTGAACAAAGCTTTGGGGCTCCCAAAGTAACAAAAGATGGTGTAACTGTTGCCAAGAGCATTGAGTTCAAAGATAAAGTGAAGAATATCGGTGCTAGCCTTGTCAAACAGGTTGCTAATGCAACCAATGATGTGGCGGGTGATGGAACCACATGTGCTACTGTTCTTACGCGTGCAATATTTGCCGAAGGATGCAAGTCAGTTGCTGCAGGGATGAATGCAATGGACTTAAGACGAGGCATCACCATGGCAGTTGATGCTGTGGTAACAAACTTAAAGAGCAGAGCACGAATGATCAGCACGTCTGAAGAGATAGCTCAAGTGGGAACCATATCTGCTAATGGAGAAAGGGAAATAGGTGAGCTGATTGCCAAGGCTATGGAGAAAGTTGGAAAAGAGGGAGTCATAACAATCTCAGATGGAAAAACATTGTACAATGAGTTGGAAGTTGTTGAAGGAATGAAATTAGACAGAGGATACATATCCCCTTATTTCATTACAAACCAGAAAAACCAAAAATGTGAACTGGAAGATCCACTTATTCTAATCCATGAAAAGAAAATATCAAGCATAAATGCTGTTGTGAAAGTCTTAGAATTAGCGTTGAAGAGACAAAGACCCTTGCTCATTGTTGCTGAAGATGTTGAAAGCGATGCTCTAGCCACACTCATTCTAAATAAACTTCGTGCTGGGATCAAGGTCTGTGCAATTAAAGCCCCAGGTTTTGGTGAGAACAGAAAGTCCAATCTGCAGGATCTTGCAGTGCTTACAGGGGGCAATCTTATCACAGAAGAGCTTGGCTTAAATCTTGACAAAGTAGAGCTGGATATGCTGGGTACTTGCAAGAAGGTCACTATTTCCAAGGATGACACTGTTATTCTTGATGGTGCTGGTGACAAAAAGGCTATTGAAGAAAGATGTGAACAGATAAGGTCCGGAATAGAGTTGAGCACTTCCGATTACGACAGGGAAAAATTACAAGAAAGACTAGCTAAACTTTCTGGTGGCGTTGCTGTATTAAAAATTGGAGGTGCCAGTGAAGCTGAAGTTGGTGAGAAAAAGGATAGAGTGACAGATGCATTGAATGCCACAAAGGCAGCTGTAGAAGAGGGCATTGTTCCTGGTGGTGGTGTTGCTCTTCTTTACGCAGCGAAAGAGTTGGAAAAACTGCCAACTGCTAACTTCGACCAGAAGATTGGAGTGCAGATTATTCAAAACGCTCTAAAGACACCTGTGCACACAATTGCTGCCAATGCCGGAGTTGAGGGAGCTGTGGTTGTTGGTAAGCTGTTAGAGCAAGATAACCCTGACATTGGGTATGATGCTGCGAAAGGTGAATACGTAGACATGATTAAGGCTGGAATAATAGATCCACTGAAAGTAATTAGGACTGCCTTGGTGGATGCTGCGAGTGTATCATCTCTGATGACGACAACAGAAGCAATCGTAACTGAAATACCCAAGGATGACAAAGAGGTTCCGCCAATGGGTGGTGGCATGGGAGGAATGGATTATTGA 1725 43.54 MYRFASGVVSKARIAGNNSQVISRLGWSRNYAAKDIRFGVEARALMLKGVEELAEAVKVTMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILIHEKKISSINAVVKVLELALKRQRPLLIVAEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKSNLQDLAVLTGGNLITEELGLNLDKVELDMLGTCKKVTISKDDTVILDGAGDKKAIEERCEQIRSGIELSTSDYDREKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLPTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNPDIGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVTEIPKDDKEVPPMGGGMGGMDY 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7735958 7740105 + Bpe015722.1 Bpe04g01053 102862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01053 574 Pfam TCP-1/cpn60 chaperonin family 53 554 IPR002423 GO:0005524
Bpe04g01053 574 Hamap Chaperonin GroEL [groEL]. 32 572 IPR001844 GO:0042026|GO:0140662
Bpe04g01053 574 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 18 567 - -
Bpe04g01053 574 SUPERFAMILY GroEL-intermediate domain like 168 235 IPR027410 -
Bpe04g01053 574 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 18 567 - -
Bpe04g01053 574 ProSitePatterns Chaperonins cpn60 signature. 435 446 IPR018370 GO:0005524|GO:0006457
Bpe04g01053 574 Gene3D - 167 440 IPR027410 -
Bpe04g01053 574 Gene3D - 36 553 IPR027413 -
Bpe04g01053 574 SUPERFAMILY GroEL equatorial domain-like 37 552 IPR027413 -
Bpe04g01053 574 SUPERFAMILY GroEL apical domain-like 215 406 IPR027409 -
Bpe04g01053 574 TIGRFAM GroEL: chaperonin GroL 33 557 IPR001844 GO:0042026|GO:0140662
Bpe04g01053 574 PRINTS 60kDa chaperonin signature 298 321 IPR001844 GO:0042026|GO:0140662
Bpe04g01053 574 PRINTS 60kDa chaperonin signature 57 83 IPR001844 GO:0042026|GO:0140662
Bpe04g01053 574 PRINTS 60kDa chaperonin signature 113 140 IPR001844 GO:0042026|GO:0140662
Bpe04g01053 574 PRINTS 60kDa chaperonin signature 380 405 IPR001844 GO:0042026|GO:0140662
Bpe04g01053 574 PRINTS 60kDa chaperonin signature 428 449 IPR001844 GO:0042026|GO:0140662
Bpe04g01053 574 Gene3D GroEL 222 403 IPR027409 -
Bpe04g01053 574 CDD GroEL 34 554 IPR001844 GO:0042026|GO:0140662
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01053 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - zju:107408563 1001.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g01053 Bpe05g01123 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01053 Bpe-Chr4:7735958 Bpe06g00778 Bpe-Chr6:18038535 0 dispersed
Bpe04g01053 Bpe-Chr4:7735958 Bpe05g01123 Bpe-Chr5:23560919 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g828 Blo01g00313 Blo12g00132 Bda03g01108 . Bpe04g01053 . Bma04g01034 Bma05g01268 . . . . . . . . . . . . . . . . Cla06g00710 Cam06g0764 Cec06g0768 Cco06g0779 Clacu06g0752 Cmu06g0735 Cre06g1515 Cone14ag0201 Cone15ag0219 . Cone4ag0377 . . . . . . . . Bpe05g01123 . . . . . . . . . . . Cpe17g00226 Bhi12g01535 . . Lac12g2109 . . . . . . . . . . . . . Cme05g00632
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000827 3 3 3 3 3 3 4 3 3 2 3 3 4 2 3 4 3 5 4 3 3 2 3 3 3 2 3 4 2 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01053 Bpe_Chr04 FPKM 11.311131 12.239009 12.08563 13.652111 12.147214 9.473845 14.85001 21.480574 19.824703 22.326391