Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01054 ATGGCGGACATGTCATTTCTTGAAGAATTTCAGGCCAATCTAGATTCGCTGCCTAATATTCTGCAAAAGAAATATGCTTTGTTACGTGATCTGGATAAAAGTTTGCAAGGACTTATAAAACAAAATGAACAAAGATGTGAGCAAGAAATAGAAGACATCAAACGGGGTGTTAAATCTGGCATTAGTTCCTCTAAAGCATCACCTCTTCGATTCTCTGATGAAGCGCTTGATGAACAAAAGCATAGCATTAGAATTGCTGATGAAAAGGTTGCTCTGGCTGTTCAAGCTTATGATTTGGTAGATACCCACATTCAGCAGCTTGATCAATATTTGAAAAAAATTGATGAAGAGCTACGGCGAGAAAGAGATGCTGTTGGTGGATTACCAACTTCAAGTATTGATGGCAGCATAAAATCTGGAAGGGGTAATGAGAGTGGCAAGGGAGTGCGTAAAAAAACACGGCAAGCAACAGCAGCAGCAGTGGCAGCAATTTCAGCGGCTACGGAAGTAGCAATACAAGCTGTTAGTAATCCAATTGGAACAGAACTGGATTTACCACTGGACCCAAACGAGCCTACCTACTGTTTCTGTAACCAAGTTAGCTTCGGTGAAATGGTAGCTTGCGACAACCCTGATTGCAAGATAGAATGGTTCCATTTCGGGTGCGTTGGATTGAAAGAGCAGCCCAAGGGGAAATGGTTCTGTTCCGACTGTGCTGTCTCAAAAAGTCGGCGGAAAGCTAGTTGA 747 42.44 MADMSFLEEFQANLDSLPNILQKKYALLRDLDKSLQGLIKQNEQRCEQEIEDIKRGVKSGISSSKASPLRFSDEALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKKIDEELRRERDAVGGLPTSSIDGSIKSGRGNESGKGVRKKTRQATAAAVAAISAATEVAIQAVSNPIGTELDLPLDPNEPTYCFCNQVSFGEMVACDNPDCKIEWFHFGCVGLKEQPKGKWFCSDCAVSKSRRKAS 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7740613 7747101 - Bpe015723.1 Bpe04g01054 102863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01054 248 Coils Coil 100 124 - -
Bpe04g01054 248 ProSitePatterns Zinc finger PHD-type signature. 195 238 IPR019786 -
Bpe04g01054 248 CDD PHD_Yng1p_like 194 240 - -
Bpe04g01054 248 Pfam Inhibitor of growth proteins N-terminal histone-binding 6 113 IPR024610 -
Bpe04g01054 248 PANTHER INHIBITOR OF GROWTH PROTEIN 4 153 245 - -
Bpe04g01054 248 PANTHER INHIBITOR OF GROWTH PROTEIN 4 4 169 - -
Bpe04g01054 248 MobiDBLite consensus disorder prediction 129 151 - -
Bpe04g01054 248 Gene3D - 4 112 - -
Bpe04g01054 248 SMART PHD_3 194 239 IPR001965 -
Bpe04g01054 248 SUPERFAMILY FYVE/PHD zinc finger 182 241 IPR011011 -
Bpe04g01054 248 PANTHER INHIBITOR OF GROWTH PROTEIN 153 245 IPR028651 -
Bpe04g01054 248 PANTHER INHIBITOR OF GROWTH PROTEIN 4 169 IPR028651 -
Bpe04g01054 248 ProSiteProfiles Zinc finger PHD-type profile. 192 241 IPR019787 -
Bpe04g01054 248 SMART ING_2 6 114 IPR024610 -
Bpe04g01054 248 CDD ING_plant 16 111 - -
Bpe04g01054 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 242 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01054 K11346 ING4; inhibitor of growth protein 4 - csv:101220012 357.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00802 Bpe-Chr4:5274914 Bpe04g01054 Bpe-Chr4:7740613 1.45E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g829 . Blo12g00131 Bda03g01109 . Bpe04g01054 . Bma04g01035 . . . Cma06g01275 . Car06g01096 . . Cpe08g00372 . Bhi01g00022 . . . . . . . . . . . . . Cone14ag0202 Cone15ag0220 . . Lsi05g01798 . . Cme06g00422 . . . . . . . . . Cmo06g01284 . . . . . . . . . . . . . . Cla05g00384 Cam05g0418 Cec05g0423 Cco05g0423 Clacu05g0413 Cmu05g0396 Cre05g0458 . Csa03g01141 Chy06g00407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004676 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01054 Bpe_Chr04 FPKM 26.325649 26.780413 33.405872 33.169922 30.914343 35.546898 27.876379 22.160429 21.176981 20.603474