Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01062 ATGGAAGCATCACCCCAGCTGCTCTCCTGCGGAATCCAGCCTCGCCGCCTCATCTTTTCCTCTCGCCATTCCTTCCTTGGAACACTTCCCCGCCTTCGTATACGTCCCCATTTGGTGGTCGCTGTTGCCACCGAGCCTAAACCCACATCGACTGAGTCGTTGAAATATTCTTCACCTAGCACCGTTAATGGTTCTTCGAGATCTCCCACTCCTTTCAAAGCAGTCAACGGAGCTTCTACGAGAATTGGAGATGTTTCAAAGGAAATTAAAAAAGTCAGGGCGCAAATGGAAGAAAATGAAGAGTTGGCAATACTCATGAGGGGTCTACGGGGGCAAAATTTAAGTGATTCACTTTTTGCAGAGGATGATGTTGAGCTGCGCCTGGTTGAGGTAGATGAAAGTAGTGAGTTTTTGCCTTTGGTGTACGATCCAACCAGCATCTCTGCATATTGGGGGAAAAGACCACGTGCTGTGGCAACCCGTATTGTTCAGCTACTTTCAGTGGCTGGTGGCTTTCTTTCACATCTTGCCTGGGATATAATCAACAAAAAGGTCAAAGAGAACGAAGTTGCTAGGGCAATTGAATTAAGGGAAATTGTGACCTCTTTGGGTCCAGCATATATTAAACTCGGGCAAGCATTGAGTATTCGACCTGACATATTGTCACCTGCTGCAATGACTGAATTGCAAAAGCTTTGCGACAAGGTGCCTTCATTTCCAGATGATGTAGCAATGGCTCTCATTAAGGAGGAACTTGGTCAGCCATGGCAAAATATCTATTCCGAACTTTCTCCTTCTCCAATTGCTGCTGCATCTTTGGGTCAGGTATATAAGGGCCGTTTGATAGAAAATGGAGATCTTGTGGCCGTTAAAGTCCAGAGGCCTTTTGTTTTGGAGACAGTGACAATTGATTTGTTTATTATACGGAATTTGGGCTTGTTTTTTCGGAAATTTCCTCAGATCTCTATAGATGTGGTTGGATTGGTTGATGAATGGGCAGCTCGTTTTTTTGAGGAGCTTGATTATGTTAATGAAGGTGAAAATGGAACACTTTTTGCTGATATGATGAAGAAGGACCTTCCACAGGTTGTCGTGCCAAGAACTTACAACAAATATACTTCGAGGAAGGTTCTTACTACTCAATGGATAGATGGAGAAAAGCTGTCACAAAGTACCGAGAGTGATGTAGGAGAACTTGTTAATGTTGGAGTCATATGCTATTTGAAGCAGTTGCTCGATACTGGGTTTTTTCATGCGGACCCTCATCCTGGAAATATGATCCGTACTCCAGACGGGAAACTAGCCATACTTGACTTTGGTTTGGTCACAAAATTAACTGATGATCAGAAGTATGGAATGATTGAAGCAATTGCACATCTCATTCATCGAGACTATGCTGCTATAGTGAAGGACTTCGTTAAACTTGGATTTATCCCAGATGGTGTGAACTTGGAACCTATCTTACCTGTTCTGGCAAAGGTTTTTGATCAGGCTCTTGAAGGAGGAGGAGCCAAAAATATCAACTTCCAGGAACTGGCTTCTGATTTGGCACAGATAACATTTGATTACCCGTTCAGGATCCCACCTTATTTTGCTCTTATAATTAGAGCAATTGGGGTGTTAGAAGGAATAGCTCTAGTGGGAAACCCTGATTTTGCCATAGTAGATGAGGCATATCCATATATTGCACAGAGGCTTCTGACGGATGAATCCCCAAGGCTTAGAAATGCATTGCGGTACACAATCTATGGGAAATCAGGAGTTTTTAATGCTGAGAGATTTATTGATGTTATGCAAGCGTTTGAAAACTTTATCACGGCAGCTAAAAGTGGGGGAGGTGAGAATATGAATGGGAACATGGCTGAACTAGGTGTTCTGCAAAGCGAAATGGGGTATCCACTTGTTGGATTTCTTCCTAGTACATACCAATCACAGCAGCCAATTCAAACAAGGGGGGCTTTAGCATTTTTGCTCTCTGAAAAAGGGAACTTCTTCCGTGAATTTCTTTTAGATGAGATTGTAAAGGGAATTGATGCAGTGACTAGAGAGCAGTTGGTTCAAATAATGGCAATCTTAGGCGTTGGAAATGCTAGACCAGTTTTCAGTATGGTTCCTGCTTTTAGACGATTTAACCCGGCTGCATTTCTACCAACAATAACAGAGGAGGACAGAGTTATACTAAATAATGTTGAAAAAGTGGCTAATTTCTTAACAATGGGGATTTCTATATCAACATCATCTAGACAGGATGTGGATATTGCTCAGATTATTAAAGAGCTTCTTCCAATTTTGCCCGGAATCTCAGCCAAGGTACTCCCAGAGGTGCTTAGTCGATTGTCTTCTCGAGTAGTAGCACGAATAATCCGAGACGCAATTTTGTAA 2382 42.57 MEASPQLLSCGIQPRRLIFSSRHSFLGTLPRLRIRPHLVVAVATEPKPTSTESLKYSSPSTVNGSSRSPTPFKAVNGASTRIGDVSKEIKKVRAQMEENEELAILMRGLRGQNLSDSLFAEDDVELRLVEVDESSEFLPLVYDPTSISAYWGKRPRAVATRIVQLLSVAGGFLSHLAWDIINKKVKENEVARAIELREIVTSLGPAYIKLGQALSIRPDILSPAAMTELQKLCDKVPSFPDDVAMALIKEELGQPWQNIYSELSPSPIAAASLGQVYKGRLIENGDLVAVKVQRPFVLETVTIDLFIIRNLGLFFRKFPQISIDVVGLVDEWAARFFEELDYVNEGENGTLFADMMKKDLPQVVVPRTYNKYTSRKVLTTQWIDGEKLSQSTESDVGELVNVGVICYLKQLLDTGFFHADPHPGNMIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYAAIVKDFVKLGFIPDGVNLEPILPVLAKVFDQALEGGGAKNINFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFAIVDEAYPYIAQRLLTDESPRLRNALRYTIYGKSGVFNAERFIDVMQAFENFITAAKSGGGENMNGNMAELGVLQSEMGYPLVGFLPSTYQSQQPIQTRGALAFLLSEKGNFFREFLLDEIVKGIDAVTREQLVQIMAILGVGNARPVFSMVPAFRRFNPAAFLPTITEEDRVILNNVEKVANFLTMGISISTSSRQDVDIAQIIKELLPILPGISAKVLPEVLSRLSSRVVARIIRDAIL 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7978690 7990139 - Bpe015732.1 Bpe04g01062 102871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01062 793 SUPERFAMILY Protein kinase-like (PK-like) 234 469 IPR011009 -
Bpe04g01062 793 MobiDBLite consensus disorder prediction 49 70 - -
Bpe04g01062 793 Coils Coil 82 102 - -
Bpe04g01062 793 ProSiteProfiles Protein kinase domain profile. 262 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g01062 793 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 30 791 - -
Bpe04g01062 793 Pfam ABC1 atypical kinase-like domain 231 470 IPR004147 -
Bpe04g01062 793 CDD ABC1_ADCK3-like 231 472 - -
Bpe04g01062 793 PANTHER PROTEIN KINASE-LIKE DOMAIN 30 791 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01062 K08869 ADCK, ABC1; aarF domain-containing kinase - cpap:110813961 1296.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00303 Bpe-Chr4:1948290 Bpe04g01062 Bpe-Chr4:7978690 1.28E-126 dispersed
Bpe04g01062 Bpe-Chr4:7978690 Bpe14g00424 Bpe-Chr14:3907013 6.39E-130 dispersed
Bpe04g01062 Bpe-Chr4:7978690 Bpe02g00276 Bpe-Chr2:1848346 1.37E-119 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g879 . Blo12g00123 Bda03g01118 . Bpe04g01062 . . . Cmo08g01004 . . . . . . . . . . . . . . . Cla06g00742 Cam06g0795 Cec06g0800 . Clacu06g0794 Cmu06g0767 Cre06g1548 . . . . . . Chy05g00545 . . . . . . . . . Sed09g0191 . . Cma08g01034 . . . . Cpe17g00245 Bhi12g01511 Tan06g2320 Cmetu05g0760 Lac12g2067 Hepe03g0344 . Lcy13g0450 . . . . . . . Lsi09g01157 . . Cme05g00693
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009075 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 4 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01062 Bpe_Chr04 FPKM 0.289855 0.0 0.0 0.0 6.198118 4.016187 4.627086 0.0 0.0 0.0