Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01069 GAATCTGCAATGGCGTCAAGTTCTAGTGTCAGCAGAAGTCCCTTACCAGTGACAGAAACATCTTCAAACTCGCATCCATACCCTCCCCCTCTTGCAAAATATGAAGATGTTATAGCCAGTCCTGAGCTCTTCATTGCTACTTTGAAAAGGCTCCATGCTTCTCTGAGAACCAAGTTTATGATCCCCATTATAGGGGGGAAAGATCTGGACTTGCATAGGCTTTTTGCTGAAAGACTATCTTCCCATGTTTTGATTTATCAGATTATCAAACAAAGAAGATGGAAGGAAGTTACTGCAGTTTTCGACTTCCCAGCCACTGCTACAAATGCATCATTTGTGTTGAGAAAGCATTATTTTTCATTGCTTTATCACTTTGAACAAATTTACTTCTTCAAAGCTCGAGAATATTCGCCTTGCCTAAAATCATACCTTTCTCCGGACAGATCTTGTTTCGTGCTTATTTCTAACTCTATGATTGCAATAGCTTTGTTGCAGAGTCCACTTTCTTCGCAGCATCATCTTATGTGTTCTTTCTTTGTAGGATCATCAAGTGGAAATTTTGTTACTGGTGTGATTGATGCAAAATTCGAAAGTGGATATCTTGTGACAGTTTCAATGGGCTCGGAATCATTAAAAGGCGTTCTTTACCAATTGCCACTGGATCAAGTGGAGCCAGTGGCTCATGGTGTAGGTTCCGGTGGTCAAGACATCACTCCCATGCGGCCGGTTGTCCGGCGTCGCCGCAGGAGAAAGAAGTCGGAAATTAAAAGGCGGGACCCTGCCCATCCAAAGCCAAACAGAAGTGGCTACAACTTTTTCTTTGCAGAGCAACATGCTAGGCTGAAACCTCTATACCCTGGAAAAGATAGAGAGATAAGCAGAATGATTGGTGAACTATGGAACAAATTGAGAGATTCTGAAAGAACAGTCAGTATTGGATTAATTTCTTTCTGTTTTACTAGTCAATGCCGTTCAATTGAGAGGTCGATTATTCTTGTTACGCAGGTTTACCAGGATCAAGCAATGAGAGACAGAGAACGATACAGAGCTGAAATGAAGGATTACAGAGAGAGGCTGAGGACAGGTCAAGTGATAAGGGATGCAGTTCCGTTACAACAGTGTCCTTCCGAGCTCCAAGTAAACATGGAAGTTGAATCGAACGAGAAGACTGAAGAAGCCGAGAATGTGGACTCGCCTCAAACACCATCTGATGAGAGTAGTTTGAGCAAATGCGGATCCGAAGATCATCAAATGGATGAGGATTCAGATGAAGATACAACTCAAAGGAACATTAATGTTGAGATGCCTGCTGAAGAACCAGGTTTTGAGGCGCAAAGGATGGAGAAAGAGTTAGAGGCAAGAAATGAGAGTATGCACATTCCAAAGGCGGCGAAAGATGAGTCGAAGGGAACGGACGAGCCATGGGATTTGTCCCTCTAG 1440 43.06 ESAMASSSSVSRSPLPVTETSSNSHPYPPPLAKYEDVIASPELFIATLKRLHASLRTKFMIPIIGGKDLDLHRLFAERLSSHVLIYQIIKQRRWKEVTAVFDFPATATNASFVLRKHYFSLLYHFEQIYFFKAREYSPCLKSYLSPDRSCFVLISNSMIAIALLQSPLSSQHHLMCSFFVGSSSGNFVTGVIDAKFESGYLVTVSMGSESLKGVLYQLPLDQVEPVAHGVGSGGQDITPMRPVVRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGELWNKLRDSERTVSIGLISFCFTSQCRSIERSIILVTQVYQDQAMRDRERYRAEMKDYRERLRTGQVIRDAVPLQQCPSELQVNMEVESNEKTEEAENVDSPQTPSDESSLSKCGSEDHQMDEDSDEDTTQRNINVEMPAEEPGFEAQRMEKELEARNESMHIPKAAKDESKGTDEPWDLSL 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8141966 8143881 + Bpe015739.2 Bpe04g01069 102878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01069 479 Pfam HMG (high mobility group) box 263 308 IPR009071 -
Bpe04g01069 479 ProSiteProfiles ARID domain profile. 38 130 IPR001606 GO:0003677
Bpe04g01069 479 MobiDBLite consensus disorder prediction 244 269 - -
Bpe04g01069 479 MobiDBLite consensus disorder prediction 382 479 - -
Bpe04g01069 479 SMART hmgende2 262 357 IPR009071 -
Bpe04g01069 479 Coils Coil 338 358 - -
Bpe04g01069 479 MobiDBLite consensus disorder prediction 1 28 - -
Bpe04g01069 479 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 6 310 - -
Bpe04g01069 479 SUPERFAMILY HMG-box 250 309 IPR036910 -
Bpe04g01069 479 Gene3D High mobility group box domain 246 366 IPR036910 -
Bpe04g01069 479 MobiDBLite consensus disorder prediction 409 428 - -
Bpe04g01069 479 SUPERFAMILY ARID-like 36 136 IPR036431 GO:0003677
Bpe04g01069 479 MobiDBLite consensus disorder prediction 441 473 - -
Bpe04g01069 479 Pfam ARID/BRIGHT DNA binding domain 42 126 IPR001606 GO:0003677
Bpe04g01069 479 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 263 356 IPR009071 -
Bpe04g01069 479 MobiDBLite consensus disorder prediction 1 27 - -
Bpe04g01069 479 CDD ARID_HMGB9-like 40 126 IPR045303 GO:0003677
Bpe04g01069 479 CDD HMGB-UBF_HMG-box 263 353 - -
Bpe04g01069 479 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 335 430 - -
Bpe04g01069 479 SMART bright_3 39 131 IPR001606 GO:0003677
Bpe04g01069 479 Gene3D - 32 138 IPR036431 GO:0003677
Bpe04g01069 479 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 310 - -
Bpe04g01069 479 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 335 430 - -
Bpe04g01069 479 SMART ARID_2 35 126 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g01069 Bpe05g01140 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00331 Bpe-Chr2:2162620 Bpe04g01069 Bpe-Chr4:8141966 1.54E-67 dispersed
Bpe04g01069 Bpe-Chr4:8141966 Bpe09g00098 Bpe-Chr9:675154 6.26E-16 dispersed
Bpe01g00236 Bpe-Chr1:1440335 Bpe04g01069 Bpe-Chr4:8141966 2.74E-41 transposed
Bpe04g01069 Bpe-Chr4:8141966 Bpe05g01140 Bpe-Chr5:23684783 1.21E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21305 PF01388 ARID 7.50E-10 CL0123 Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01069 - - dzi:111288396 410.609