Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe04g01069 | GAATCTGCAATGGCGTCAAGTTCTAGTGTCAGCAGAAGTCCCTTACCAGTGACAGAAACATCTTCAAACTCGCATCCATACCCTCCCCCTCTTGCAAAATATGAAGATGTTATAGCCAGTCCTGAGCTCTTCATTGCTACTTTGAAAAGGCTCCATGCTTCTCTGAGAACCAAGTTTATGATCCCCATTATAGGGGGGAAAGATCTGGACTTGCATAGGCTTTTTGCTGAAAGACTATCTTCCCATGTTTTGATTTATCAGATTATCAAACAAAGAAGATGGAAGGAAGTTACTGCAGTTTTCGACTTCCCAGCCACTGCTACAAATGCATCATTTGTGTTGAGAAAGCATTATTTTTCATTGCTTTATCACTTTGAACAAATTTACTTCTTCAAAGCTCGAGAATATTCGCCTTGCCTAAAATCATACCTTTCTCCGGACAGATCTTGTTTCGTGCTTATTTCTAACTCTATGATTGCAATAGCTTTGTTGCAGAGTCCACTTTCTTCGCAGCATCATCTTATGTGTTCTTTCTTTGTAGGATCATCAAGTGGAAATTTTGTTACTGGTGTGATTGATGCAAAATTCGAAAGTGGATATCTTGTGACAGTTTCAATGGGCTCGGAATCATTAAAAGGCGTTCTTTACCAATTGCCACTGGATCAAGTGGAGCCAGTGGCTCATGGTGTAGGTTCCGGTGGTCAAGACATCACTCCCATGCGGCCGGTTGTCCGGCGTCGCCGCAGGAGAAAGAAGTCGGAAATTAAAAGGCGGGACCCTGCCCATCCAAAGCCAAACAGAAGTGGCTACAACTTTTTCTTTGCAGAGCAACATGCTAGGCTGAAACCTCTATACCCTGGAAAAGATAGAGAGATAAGCAGAATGATTGGTGAACTATGGAACAAATTGAGAGATTCTGAAAGAACAGTCAGTATTGGATTAATTTCTTTCTGTTTTACTAGTCAATGCCGTTCAATTGAGAGGTCGATTATTCTTGTTACGCAGGTTTACCAGGATCAAGCAATGAGAGACAGAGAACGATACAGAGCTGAAATGAAGGATTACAGAGAGAGGCTGAGGACAGGTCAAGTGATAAGGGATGCAGTTCCGTTACAACAGTGTCCTTCCGAGCTCCAAGTAAACATGGAAGTTGAATCGAACGAGAAGACTGAAGAAGCCGAGAATGTGGACTCGCCTCAAACACCATCTGATGAGAGTAGTTTGAGCAAATGCGGATCCGAAGATCATCAAATGGATGAGGATTCAGATGAAGATACAACTCAAAGGAACATTAATGTTGAGATGCCTGCTGAAGAACCAGGTTTTGAGGCGCAAAGGATGGAGAAAGAGTTAGAGGCAAGAAATGAGAGTATGCACATTCCAAAGGCGGCGAAAGATGAGTCGAAGGGAACGGACGAGCCATGGGATTTGTCCCTCTAG | 1440 | 43.06 | ESAMASSSSVSRSPLPVTETSSNSHPYPPPLAKYEDVIASPELFIATLKRLHASLRTKFMIPIIGGKDLDLHRLFAERLSSHVLIYQIIKQRRWKEVTAVFDFPATATNASFVLRKHYFSLLYHFEQIYFFKAREYSPCLKSYLSPDRSCFVLISNSMIAIALLQSPLSSQHHLMCSFFVGSSSGNFVTGVIDAKFESGYLVTVSMGSESLKGVLYQLPLDQVEPVAHGVGSGGQDITPMRPVVRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGELWNKLRDSERTVSIGLISFCFTSQCRSIERSIILVTQVYQDQAMRDRERYRAEMKDYRERLRTGQVIRDAVPLQQCPSELQVNMEVESNEKTEEAENVDSPQTPSDESSLSKCGSEDHQMDEDSDEDTTQRNINVEMPAEEPGFEAQRMEKELEARNESMHIPKAAKDESKGTDEPWDLSL | 479 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8141966 | 8143881 | + | Bpe015739.2 | Bpe04g01069 | 102878 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe04g01069 | 479 | Pfam | HMG (high mobility group) box | 263 | 308 | IPR009071 | - | |
Bpe04g01069 | 479 | ProSiteProfiles | ARID domain profile. | 38 | 130 | IPR001606 | GO:0003677 | |
Bpe04g01069 | 479 | MobiDBLite | consensus disorder prediction | 244 | 269 | - | - | |
Bpe04g01069 | 479 | MobiDBLite | consensus disorder prediction | 382 | 479 | - | - | |
Bpe04g01069 | 479 | SMART | hmgende2 | 262 | 357 | IPR009071 | - | |
Bpe04g01069 | 479 | Coils | Coil | 338 | 358 | - | - | |
Bpe04g01069 | 479 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Bpe04g01069 | 479 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 15 | 6 | 310 | - | - | |
Bpe04g01069 | 479 | SUPERFAMILY | HMG-box | 250 | 309 | IPR036910 | - | |
Bpe04g01069 | 479 | Gene3D | High mobility group box domain | 246 | 366 | IPR036910 | - | |
Bpe04g01069 | 479 | MobiDBLite | consensus disorder prediction | 409 | 428 | - | - | |
Bpe04g01069 | 479 | SUPERFAMILY | ARID-like | 36 | 136 | IPR036431 | GO:0003677 | |
Bpe04g01069 | 479 | MobiDBLite | consensus disorder prediction | 441 | 473 | - | - | |
Bpe04g01069 | 479 | Pfam | ARID/BRIGHT DNA binding domain | 42 | 126 | IPR001606 | GO:0003677 | |
Bpe04g01069 | 479 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 263 | 356 | IPR009071 | - | |
Bpe04g01069 | 479 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Bpe04g01069 | 479 | CDD | ARID_HMGB9-like | 40 | 126 | IPR045303 | GO:0003677 | |
Bpe04g01069 | 479 | CDD | HMGB-UBF_HMG-box | 263 | 353 | - | - | |
Bpe04g01069 | 479 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 15 | 335 | 430 | - | - | |
Bpe04g01069 | 479 | SMART | bright_3 | 39 | 131 | IPR001606 | GO:0003677 | |
Bpe04g01069 | 479 | Gene3D | - | 32 | 138 | IPR036431 | GO:0003677 | |
Bpe04g01069 | 479 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 6 | 310 | - | - | |
Bpe04g01069 | 479 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 335 | 430 | - | - | |
Bpe04g01069 | 479 | SMART | ARID_2 | 35 | 126 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe04g01069 | Bpe05g01140 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe02g00331 | Bpe-Chr2:2162620 | Bpe04g01069 | Bpe-Chr4:8141966 | 1.54E-67 | dispersed | |
Bpe04g01069 | Bpe-Chr4:8141966 | Bpe09g00098 | Bpe-Chr9:675154 | 6.26E-16 | dispersed | |
Bpe01g00236 | Bpe-Chr1:1440335 | Bpe04g01069 | Bpe-Chr4:8141966 | 2.74E-41 | transposed | |
Bpe04g01069 | Bpe-Chr4:8141966 | Bpe05g01140 | Bpe-Chr5:23684783 | 1.21E-170 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21305 | PF01388 | ARID | 7.50E-10 | CL0123 | Bpe | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe04g01069 | - | - | dzi:111288396 | 410.609 |