Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01069 GAATCTGCAATGGCGTCAAGTTCTAGTGTCAGCAGAAGTCCCTTACCAGTGACAGAAACATCTTCAAACTCGCATCCATACCCTCCCCCTCTTGCAAAATATGAAGATGTTATAGCCAGTCCTGAGCTCTTCATTGCTACTTTGAAAAGGCTCCATGCTTCTCTGAGAACCAAGTTTATGATCCCCATTATAGGGGGGAAAGATCTGGACTTGCATAGGCTTTTTGCTGAAAGACTATCTTCCCATGTTTTGATTTATCAGATTATCAAACAAAGAAGATGGAAGGAAGTTACTGCAGTTTTCGACTTCCCAGCCACTGCTACAAATGCATCATTTGTGTTGAGAAAGCATTATTTTTCATTGCTTTATCACTTTGAACAAATTTACTTCTTCAAAGCTCGAGAATATTCGCCTTGCCTAAAATCATACCTTTCTCCGGACAGATCTTGTTTCGTGCTTATTTCTAACTCTATGATTGCAATAGCTTTGTTGCAGAGTCCACTTTCTTCGCAGCATCATCTTATGTGTTCTTTCTTTGTAGGATCATCAAGTGGAAATTTTGTTACTGGTGTGATTGATGCAAAATTCGAAAGTGGATATCTTGTGACAGTTTCAATGGGCTCGGAATCATTAAAAGGCGTTCTTTACCAATTGCCACTGGATCAAGTGGAGCCAGTGGCTCATGGTGTAGGTTCCGGTGGTCAAGACATCACTCCCATGCGGCCGGTTGTCCGGCGTCGCCGCAGGAGAAAGAAGTCGGAAATTAAAAGGCGGGACCCTGCCCATCCAAAGCCAAACAGAAGTGGCTACAACTTTTTCTTTGCAGAGCAACATGCTAGGCTGAAACCTCTATACCCTGGAAAAGATAGAGAGATAAGCAGAATGATTGGTGAACTATGGAACAAATTGAGAGATTCTGAAAGAACAGTCAGTATTGGATTAATTTCTTTCTGTTTTACTAGTCAATGCCGTTCAATTGAGAGGTCGATTATTCTTGTTACGCAGGTTTACCAGGATCAAGCAATGAGAGACAGAGAACGATACAGAGCTGAAATGAAGGATTACAGAGAGAGGCTGAGGACAGGTCAAGTGATAAGGGATGCAGTTCCGTTACAACAGTGTCCTTCCGAGCTCCAAGTAAACATGGAAGTTGAATCGAACGAGAAGACTGAAGAAGCCGAGAATGTGGACTCGCCTCAAACACCATCTGATGAGAGTAGTTTGAGCAAATGCGGATCCGAAGATCATCAAATGGATGAGGATTCAGATGAAGATACAACTCAAAGGAACATTAATGTTGAGATGCCTGCTGAAGAACCAGGTTTTGAGGCGCAAAGGATGGAGAAAGAGTTAGAGGCAAGAAATGAGAGTATGCACATTCCAAAGGCGGCGAAAGATGAGTCGAAGGGAACGGACGAGCCATGGGATTTGTCCCTCTAG 1440 43.06 ESAMASSSSVSRSPLPVTETSSNSHPYPPPLAKYEDVIASPELFIATLKRLHASLRTKFMIPIIGGKDLDLHRLFAERLSSHVLIYQIIKQRRWKEVTAVFDFPATATNASFVLRKHYFSLLYHFEQIYFFKAREYSPCLKSYLSPDRSCFVLISNSMIAIALLQSPLSSQHHLMCSFFVGSSSGNFVTGVIDAKFESGYLVTVSMGSESLKGVLYQLPLDQVEPVAHGVGSGGQDITPMRPVVRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGELWNKLRDSERTVSIGLISFCFTSQCRSIERSIILVTQVYQDQAMRDRERYRAEMKDYRERLRTGQVIRDAVPLQQCPSELQVNMEVESNEKTEEAENVDSPQTPSDESSLSKCGSEDHQMDEDSDEDTTQRNINVEMPAEEPGFEAQRMEKELEARNESMHIPKAAKDESKGTDEPWDLSL 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8141966 8143881 + Bpe015739.2 Bpe04g01069 102878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01069 479 Pfam HMG (high mobility group) box 263 308 IPR009071 -
Bpe04g01069 479 ProSiteProfiles ARID domain profile. 38 130 IPR001606 GO:0003677
Bpe04g01069 479 MobiDBLite consensus disorder prediction 244 269 - -
Bpe04g01069 479 MobiDBLite consensus disorder prediction 382 479 - -
Bpe04g01069 479 SMART hmgende2 262 357 IPR009071 -
Bpe04g01069 479 Coils Coil 338 358 - -
Bpe04g01069 479 MobiDBLite consensus disorder prediction 1 28 - -
Bpe04g01069 479 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 6 310 - -
Bpe04g01069 479 SUPERFAMILY HMG-box 250 309 IPR036910 -
Bpe04g01069 479 Gene3D High mobility group box domain 246 366 IPR036910 -
Bpe04g01069 479 MobiDBLite consensus disorder prediction 409 428 - -
Bpe04g01069 479 SUPERFAMILY ARID-like 36 136 IPR036431 GO:0003677
Bpe04g01069 479 MobiDBLite consensus disorder prediction 441 473 - -
Bpe04g01069 479 Pfam ARID/BRIGHT DNA binding domain 42 126 IPR001606 GO:0003677
Bpe04g01069 479 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 263 356 IPR009071 -
Bpe04g01069 479 MobiDBLite consensus disorder prediction 1 27 - -
Bpe04g01069 479 CDD ARID_HMGB9-like 40 126 IPR045303 GO:0003677
Bpe04g01069 479 CDD HMGB-UBF_HMG-box 263 353 - -
Bpe04g01069 479 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 335 430 - -
Bpe04g01069 479 SMART bright_3 39 131 IPR001606 GO:0003677
Bpe04g01069 479 Gene3D - 32 138 IPR036431 GO:0003677
Bpe04g01069 479 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 310 - -
Bpe04g01069 479 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 335 430 - -
Bpe04g01069 479 SMART ARID_2 35 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01069 - - - dzi:111288396 410.609
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g01069 Bpe05g01140 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00331 Bpe-Chr2:2162620 Bpe04g01069 Bpe-Chr4:8141966 1.54E-67 dispersed
Bpe04g01069 Bpe-Chr4:8141966 Bpe09g00098 Bpe-Chr9:675154 6.26E-16 dispersed
Bpe01g00236 Bpe-Chr1:1440335 Bpe04g01069 Bpe-Chr4:8141966 2.74E-41 transposed
Bpe04g01069 Bpe-Chr4:8141966 Bpe05g01140 Bpe-Chr5:23684783 1.21E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe05g01140 CCT 27 384 ARID Transcription Factor Family AT1G04880 57.9 4.0e-102 368.6
Bpe04g01069 CCT 30 382 ARID Transcription Factor Family AT1G04880 53.4 1.8e-86 316.6
Bpe02g00331 . 16 337 ARID Transcription Factor Family AT1G76110 60.6 8.0e-103 370.5
Bpe03g00693 CCT,ECH 2 779 ARID Transcription Factor Family AT3G43240 56.4 4.2e-253 870.9
Bpe10g00717 CCT,ECH 1 770 ARID Transcription Factor Family AT3G43240 56.0 6.4e-246 847.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21305 PF01388 ARID 7.50E-10 CL0123 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01069 Bpe_Chr04 FPKM 1.034313 1.28771 3.832503 3.166942 9.778085 9.605188 10.228756 4.617054 4.353956 5.143389