Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01072 ATGGAATCCACTCAATCTCCCTCTTCTTCTGAGATTCACAAGAACCAAGATCCCGAAAATATCAAGGTTATTGAATGGGAGGATTTTGAGCAAGAGCTGGCTAGGTTGTGGAGTCTTTCTTCTGCTCTCAACGATGCTAAACAAAAGAAACAAATTCTTCAGGAGAAGCTTGAGTCTCTCATTCAGGTTGAAGCTGAGTCATTAAATCGATCAAATGAACTTGAGCAAATGCGACAGAAACTGGAGGCAAGGAAATCGATTAGGGAGAACATGTCAACAGATACTAAACTGATTGCAGAAGATGCCAAAACCCAAGAGGAAACTCTTAGTAGTAAAGTTAGATCACTTTTGGTGGCTGGGGCAGCTCTCTCTGTGGCTAGGAAGAGATTACAGGATTCAAATAAGTTGATTTCCGGGGAAAAGGGTTATATTCGACTTGCAAACTTACGGAGGATGTTACGAACAAGACAACAGTATATGGTATCCCAAGTTTCATTGCTCTATCCTGTAAAGATCTCAGCTGGACCTGCAAAGGAGCAAGAACTGGAATCATTTCCAAGCACCAGTAGATCAGGAAATTCCACTGGATCAAAACCTTCCCATCACGGACCACTAACGATTTTGGGTCTGCATTTGACGATGCTTCCATTTAAAATAATGAGTTTTTTTACTGATAAGAAGGAGGTTCAAAGTTTCGCTGCTTCCTTGGGCTATGTTGCTCACGCTGTTTCACTTATAGCTTCTTACTTAAATGTTCCCCTGCGTTATCCATTGCGTCTGGGTGGTTCTCATTCATATATTAATGACTATGCACCTTCAATAGAATCTACAACACCGGAGACTCTAAACACTGCTCTGCTTTCCTCCACTGTAAAGCACGTAGAGTTTCCTCTTTTCTTAGAAGGTCAAGACACAACCAGAGCAGCTTATGCGGTATTCTTGCTAAACAAGGATTTGGAGCAACTTTTGAATTTTATTGGGGTTAAGAGCCTTGGCCCGAGGCATTTATTAGCTAATTTGAAGGAGCTTCTAAGGATCATCCAGTCAGCTGATTTTGTAGATAGTTGA 1068 41.39 MESTQSPSSSEIHKNQDPENIKVIEWEDFEQELARLWSLSSALNDAKQKKQILQEKLESLIQVEAESLNRSNELEQMRQKLEARKSIRENMSTDTKLIAEDAKTQEETLSSKVRSLLVAGAALSVARKRLQDSNKLISGEKGYIRLANLRRMLRTRQQYMVSQVSLLYPVKISAGPAKEQELESFPSTSRSGNSTGSKPSHHGPLTILGLHLTMLPFKIMSFFTDKKEVQSFAASLGYVAHAVSLIASYLNVPLRYPLRLGGSHSYINDYAPSIESTTPETLNTALLSSTVKHVEFPLFLEGQDTTRAAYAVFLLNKDLEQLLNFIGVKSLGPRHLLANLKELLRIIQSADFVDS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8178957 8182415 - Bpe015744.1 Bpe04g01072 102881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01072 355 MobiDBLite consensus disorder prediction 179 201 - -
Bpe04g01072 355 MobiDBLite consensus disorder prediction 182 201 - -
Bpe04g01072 355 MobiDBLite consensus disorder prediction 1 20 - -
Bpe04g01072 355 PANTHER UV RADIATION RESISTANCE-ASSOCIATED GENE PROTEIN 13 351 - -
Bpe04g01072 355 PANTHER UV RADIATION RESISTANCE-ASSOCIATED GENE PROTEIN 13 351 - -
Bpe04g01072 355 Coils Coil 36 84 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01072 K21249 UVRAG; UV radiation resistance-associated gene protein - csv:101206604 488.804
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1002 . Blo12g00114 Bda03g01129 . Bpe04g01072 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009077 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01072 Bpe_Chr04 FPKM 22.209452 22.649618 9.603994 8.802222 29.280493 33.167278 31.466455 4.598106 4.981401 5.250624