Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01073 ATGGAGAAGAAGCGTCTACCGGATTGGCTCAACAGCTCCCTCTGGTCATCGGCCTCCGACCATCGCCTCCACCGATATTCCTCCCAATGTACCCTTGTTTCCCAATCTGCCGTTGAACATCCAGCTCCGCTTCCTCCTCCTTCTGTTACTTCCACCATTAGATCTGAGCCACCAAAGCAAGAAACTGAGCACTCTACGTCGCATGATAATCTTAGTAGCGACGATGATGAACCTTCTCCAGGCCCTTCTGCCGAGGATATTTCTCGCCAGGCTCAGCTCTTGGTGGAGCTATCGCAGAAGGTTATAAGCATGAGTGCATTGCGAAAAATAGCATCTCAGGGTATACCTGATGGCCCTGGTATTCGTTCTACTGTCTGGAAGCTCTTACTAGGGTATTTGCCTTCAGATCGTGGCCTTTGGCAGTCTGAATTAGCCAAAAAAAGGTCCCAGTACAAGCATTTTAAGGAGGATCTTTTGATGAATCCCTCAGAAATAGCTCGTAGATTAGATAAATCCACAAATAATGTGAAAGATGATCCACAATCTGAAGGAGAGGGATTACTTTTGCGTTCAGAAATAACTGAAGGGGAGCATCCATTGAGTATTGGGAAAACCAGCATCTGGAATCAGTACTTTCAGGACTCTGAGATTATTGAGCAGATTGATCGAGATGTAATGCGTACTCATCCAGACTTTCATTTTTTCTCTGGGGACTCATCGTTTGCAAAATCTAATCAGGAGGCTCTTAGAAACATCTTAATTGTCTTTGCAAAGTTGAACCCGGGTATCAGATATGTTCAAGGAATGAATGAAATTTTGGCTCCGTTATTCTTTGTATTAAAAAATGACCCTGATGAAGAAAATGTGGCCTATGCCGAGGCAGATGCATTCTTCTGTTTTGTTGAGGTGTTAAGTGGCTTCCGAGATCATTTCTGCCAGCAGCTGGATAACAGTGTCGTTGGAATCCGTTCTACAATTACAAAATTGTCTCAGCTTTTGAAAGAACATGATGAAGAATTGTGGCGGCACCTTGAGATCACGACTAAAGTAAATCCACAGTTCTATGCATTTAGATGGATTACTCTCCTCTTGACTCAGGAGTTCAATTTTGCTGACAGCCTTCACATTTGGGACACTATTTTGAGCGATCGCGAAGGTCCCCTGGAAACATTACTTAGAATATGCTGTGCAATGTTGATTCTGGTCAGAAAGCGGCTTCTCGCTGGAGATTTCACTTCTAATCTGAAATTGCTTCAGAACTATCCGCCCACAAACATAAGCCATTTGCTTTATGTTGCCAACAAGCTGCGTGCCAGAGCGTGA 1323 43.99 MEKKRLPDWLNSSLWSSASDHRLHRYSSQCTLVSQSAVEHPAPLPPPSVTSTIRSEPPKQETEHSTSHDNLSSDDDEPSPGPSAEDISRQAQLLVELSQKVISMSALRKIASQGIPDGPGIRSTVWKLLLGYLPSDRGLWQSELAKKRSQYKHFKEDLLMNPSEIARRLDKSTNNVKDDPQSEGEGLLLRSEITEGEHPLSIGKTSIWNQYFQDSEIIEQIDRDVMRTHPDFHFFSGDSSFAKSNQEALRNILIVFAKLNPGIRYVQGMNEILAPLFFVLKNDPDEENVAYAEADAFFCFVEVLSGFRDHFCQQLDNSVVGIRSTITKLSQLLKEHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTILSDREGPLETLLRICCAMLILVRKRLLAGDFTSNLKLLQNYPPTNISHLLYVANKLRARA 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8215201 8219676 + Bpe015745.1 Bpe04g01073 102882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01073 440 SMART tbc_4 111 410 IPR000195 -
Bpe04g01073 440 Pfam Rab-GTPase-TBC domain 211 407 IPR000195 -
Bpe04g01073 440 MobiDBLite consensus disorder prediction 57 75 - -
Bpe04g01073 440 MobiDBLite consensus disorder prediction 34 87 - -
Bpe04g01073 440 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 96 343 IPR035969 -
Bpe04g01073 440 Gene3D - 320 440 - -
Bpe04g01073 440 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 321 437 IPR035969 -
Bpe04g01073 440 ProSiteProfiles TBC/rab GAP domain profile. 116 384 IPR000195 -
Bpe04g01073 440 Gene3D - 86 139 - -
Bpe04g01073 440 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 203 312 - -
Bpe04g01073 440 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 3 438 - -
Bpe04g01073 440 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01073 K24796 TBC1D13; TBC1 domain family member 13 - csv:101208456 688.723
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02026 Bpe-Chr2:21865477 Bpe04g01073 Bpe-Chr4:8215201 7.29E-145 dispersed
Bpe02g02069 Bpe-Chr2:22203554 Bpe04g01073 Bpe-Chr4:8215201 2.06E-09 dispersed
Bpe04g01073 Bpe-Chr4:8215201 Bpe06g00553 Bpe-Chr6:16551033 5.83E-22 dispersed
Bpe13g01103 Bpe-Chr13:16604279 Bpe04g01073 Bpe-Chr4:8215201 1.97E-07 dispersed
Bpe04g01073 Bpe-Chr4:8215201 Bpe05g01144 Bpe-Chr5:23697707 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g999 . Blo12g00111 Bda03g01130 . Bpe04g01073 . . . . . Cma06g01698 . Car06g01440 . . . . . . . . . . . . . . . . . . . . . . . Csa02g00896 . . . . . . . . . . . . . . . . Car17g00072 Cpe12g00072 . Bhi12g01464 . . . Hepe03g0386 . . . . . . . . . Lsi09g01112 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004668 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01073 Bpe_Chr04 FPKM 7.181448 8.549876 12.872928 13.210744 5.037304 5.987815 4.509964 0.0 0.0 0.0