Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01108 TTCATTACATCAGCAGACTTGGATGTGGGGAACATTATGGAGGAAGCAAAAATGAGATGGCTACGACCAAATGAAATTCATGCTATACTCTGTAATCACAAATACTTCAGCATCAAGGTCAAGCCAGTGCACTTGCCCCCAGGTACAATTTTAAGATTGTTGTTATATTGTTGTGGCACTATAGAGTTATTTGATCGCAAGATGCTTAGGAACTTCAGGAAAGATGGTCATAACTGGAAAAAGAAAAAGGATGGGAAGACCGTTAAAGAAGCACATGAACATCTGAAGGTTGGTAATGAAGAAAGGATCCATGTATACTATGCACATGGACAGGATACTCCAACCTTCGTCCGCAGGTGTTATTGGCTACTTGATAAGAGTCTGGAACACATAGTTCTTGTTCATTATCGTGAAACTCAAGAGTTGCAGGGTTCTCCAACAAACCCAGTAAATTCTAATTCTAGTTCTGTCTCTGACCATTCTGCCTCTTGGCGTTTTTCGGAAGAACTAGATTCTGAGACTAACCAAACTCTATATGTTGGTGAAAATGAACTTCTAGCAGAGTGTAGGAATAAGTTAACTGCGAAGCATTATGAGCAAAGACTTCATGAAATTAACACGCTTGAATGGGATGAGCTTCTTGTAACAGATGATCTTTCCAACACACCTAAAGGAGGTTTTCACCAACAGAATCAAGTTGCGGCAAATGATTCCACTGTTGGAGGAGGCAACACGTTGTTGGAGGAAATTTCTACGTTTGACAATGTCAGTGGATCAATTGGGAGAAATAACACAAATCATTTTGGTTTGCCAAATAGCTCCTACATATCTACTATGGTAAGTCAATTAAATTCAAATGCGCAGAAAGGGAATATCATTGCAATGGCCTCCAATGTACCCTTAGATATTATGGCCAACGAGGGGTTGCAAAGTCAGGATAGCTTTGGGCAGTGGATAAATGATATTATCTCTGTCTCTCCTGGTTCTGTAGATGATCCAGTTTTTGACTCCTCCATTTTGCCTCATTATGATGAATTTACCTCTGCTACGATAAATCATCAACCATCTTCTGTGCCAGAGCAAATGTTTACCATAACTGATATCTCTCCTGGATGGGCATTTACTGCAGAAAAAACCAAGATTTTAATAACTGGATTTTTTCATGAAGAGTTTGCTCATCTGGCTAAGTCCAGTTTGTTGTGTCTCTGTGGCGATGTTTGTATTCCTACAGAAGTCGTTCAACTTGGAGTTTATCGTTGCCTGGTACCTCCACATCCACCTGGATGTGTAAATATCTATCTCAGTTTAGATGGTCATAAACCAATCAGCCAAGTTATGAATTTTGAGTATCGCAACCAATTATTGGATGGTTCAGGAGTTTCTTTAGACGAAAAGGAAAGGTGGGAGGAGTTTGAAGTTCAAATGCGGCTTCTTGGTTTGCTTTTCTCTGCATCGAAGAGCCTGAACATTCTGTCTAGTAAAGTATCACAAAATGGCTTGAAGGTAGCAAGAAACTTTGCTCAAAAAACATCTAACATTGCTAATAGTTGGGCTTATTTGCACAAGTCAATTCAAGATAACAAAATTTCATTTCCTCTAGCAAAAGATGGCCTATTGGAACTTATTTTAAGGAACAGAGTAAGGGAATGGCTGTTAGAAAGGATTATTGAAGGCTCCAAGAAGAGCACTGAATTTGATGCTTACGGTCAAGGAGTAATACACTTGTGTGCCATCCTGGGGTATTCATGGGCTATACAATTATTTGCTTGGTCAGGTTTAACATTGGATTTTCGGGACAAATCTGGATGGACAGCTCTTCACTGGGCAGCGTATTGTGGAAGGGAGAAAATGGTTGCAGTTCTTCTATATGCCGGGGCAAAGCCAAACTTGGTCACAGACCCAACCTCAGAAAATCCTGGAGGATGCACAGCTGCTGATCTTGCATATGTTAAGGGTCATGATGGCTTGGCTGCCTATCTTTCAGAAAAGGCTTTAGTAGCTCATTTCCAGGAAATGAGTATAGCTGGAAATATAAGTGGTACACTGCAAATCAACGCAACTGACATGGAGAGTGTAAACTCTGAGAATCTCAGTGAGGAGCAGCTATATATGAAAGATACTTTGGCAGCCTACAGAACCGCTGCCGATGCAGCAGCACGTATAAATGCTGCATTTCGCGAGCATTCTTATAAGCAAAGAACTAAAGAAGTTCAGGTTTCTACTCCAGAAATGGAAGCGCGAAATATTATTGCAGCTATGAAAATTCAGCATGCATTCCGCAATTATGAAATGCGTCGAAAAATGGCAGCTGCTGCTCGTATACAACACAGATTCCGTACTTGGAAAATGCGTAAAGATTTCCTTAACATGCGACGTCAAGCTATAAGAATTCAAGCTGCATTTCGAGGCTTCCAAGAACGGAGGCATTACCGTAAAATTATTTGGTCTGTTGGAGTGCTTGAGAAAGCTATACTACGGTGGCGCTTAAAGAGAAAAGGCTTTCGTGGGCTTCAGGTTGAACCTTTGGAACCAATTGCAGAGGTAAGAGAGGAAAGTGATACCGAGGAAGACTTTTACCGTACAAGCCAGAAACAAGCAAGTGAACGTGTTGAGAGATCTGTTGTACAAGTTCAGGCCTTGTTTCGTTCAAGGAAAGCACAAGAAGACTATAAGAAAATGAAGATGGCCCATCTGGAAGCAATGGTAAGGAACACACCCTGA 2721 40.94 FITSADLDVGNIMEEAKMRWLRPNEIHAILCNHKYFSIKVKPVHLPPGTILRLLLYCCGTIELFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDTPTFVRRCYWLLDKSLEHIVLVHYRETQELQGSPTNPVNSNSSSVSDHSASWRFSEELDSETNQTLYVGENELLAECRNKLTAKHYEQRLHEINTLEWDELLVTDDLSNTPKGGFHQQNQVAANDSTVGGGNTLLEEISTFDNVSGSIGRNNTNHFGLPNSSYISTMVSQLNSNAQKGNIIAMASNVPLDIMANEGLQSQDSFGQWINDIISVSPGSVDDPVFDSSILPHYDEFTSATINHQPSSVPEQMFTITDISPGWAFTAEKTKILITGFFHEEFAHLAKSSLLCLCGDVCIPTEVVQLGVYRCLVPPHPPGCVNIYLSLDGHKPISQVMNFEYRNQLLDGSGVSLDEKERWEEFEVQMRLLGLLFSASKSLNILSSKVSQNGLKVARNFAQKTSNIANSWAYLHKSIQDNKISFPLAKDGLLELILRNRVREWLLERIIEGSKKSTEFDAYGQGVIHLCAILGYSWAIQLFAWSGLTLDFRDKSGWTALHWAAYCGREKMVAVLLYAGAKPNLVTDPTSENPGGCTAADLAYVKGHDGLAAYLSEKALVAHFQEMSIAGNISGTLQINATDMESVNSENLSEEQLYMKDTLAAYRTAADAAARINAAFREHSYKQRTKEVQVSTPEMEARNIIAAMKIQHAFRNYEMRRKMAAAARIQHRFRTWKMRKDFLNMRRQAIRIQAAFRGFQERRHYRKIIWSVGVLEKAILRWRLKRKGFRGLQVEPLEPIAEVREESDTEEDFYRTSQKQASERVERSVVQVQALFRSRKAQEDYKKMKMAHLEAMVRNTP 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8924832 8942673 + Bpe015783.1 Bpe04g01108 102917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01108 906 Pfam IQ calmodulin-binding motif 792 811 IPR000048 GO:0005515
Bpe04g01108 906 Gene3D - 534 671 IPR036770 -
Bpe04g01108 906 ProSiteProfiles CG-1 DNA-binding domain profile. 9 145 IPR005559 GO:0003677
Bpe04g01108 906 SMART CG_1_2 12 140 IPR005559 GO:0003677
Bpe04g01108 906 ProSiteProfiles IQ motif profile. 871 899 IPR000048 GO:0005515
Bpe04g01108 906 ProSiteProfiles IQ motif profile. 790 814 IPR000048 GO:0005515
Bpe04g01108 906 ProSiteProfiles Ankyrin repeat profile. 601 633 IPR002110 GO:0005515
Bpe04g01108 906 Gene3D - 766 814 - -
Bpe04g01108 906 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 4 902 - -
Bpe04g01108 906 SMART ANK_2a 601 630 IPR002110 GO:0005515
Bpe04g01108 906 SMART ANK_2a 640 669 IPR002110 GO:0005515
Bpe04g01108 906 Pfam IPT/TIG domain 364 450 IPR002909 -
Bpe04g01108 906 Pfam CG-1 domain 15 138 IPR005559 GO:0003677
Bpe04g01108 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 760 897 IPR027417 -
Bpe04g01108 906 SUPERFAMILY Ankyrin repeat 560 663 IPR036770 -
Bpe04g01108 906 SMART iq_5 789 811 IPR000048 GO:0005515
Bpe04g01108 906 SMART iq_5 766 788 IPR000048 GO:0005515
Bpe04g01108 906 SMART iq_5 869 891 IPR000048 GO:0005515
Bpe04g01108 906 ProSiteProfiles IQ motif profile. 767 793 IPR000048 GO:0005515
Bpe04g01108 906 Pfam Ankyrin repeats (3 copies) 550 630 IPR002110 GO:0005515
Bpe04g01108 906 Gene3D Immunoglobulins 358 454 IPR013783 -
Bpe04g01108 906 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 4 902 - -
Bpe04g01108 906 ProSiteProfiles IQ motif profile. 751 777 IPR000048 GO:0005515
Bpe04g01108 906 SUPERFAMILY E set domains 364 451 IPR014756 -
Bpe04g01108 906 ProSiteProfiles Ankyrin repeat region circular profile. 601 629 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01108 K21596 CAMTA; calmodulin-binding transcription activator - fve:101314356 1179.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g01108 Bpe05g00817 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01108 Bpe-Chr4:8924832 Bpe05g00947 Bpe-Chr5:22392835 1.25E-29 dispersed
Bpe04g01108 Bpe-Chr4:8924832 Bpe05g00817 Bpe-Chr5:21459888 5.54E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00329 . 1 1067 CAMTA Transcription Factor Family AT5G64220 50.7 5.3e-254 874.4
Bpe05g00817 CCT 24 169 CAMTA Transcription Factor Family AT5G64220 51.4 1.8e-36 151.8
Bpe04g01108 CCT 12 900 CAMTA Transcription Factor Family AT3G16940 53.5 1.4e-257 885.9
Bpe12g00329 . 18 158 CAMTA Transcription Factor Family AT3G16940 54.6 7.5e-38 156.0
Bpe04g01108 CCT 1 625 CAMTA Transcription Factor Family AT4G16150 52.6 3.0e-192 669.1
Bpe12g00329 . 1 1067 CAMTA Transcription Factor Family AT5G64220 50.7 5.3e-254 874.4
Bpe05g00817 CCT 24 169 CAMTA Transcription Factor Family AT5G64220 51.4 1.8e-36 151.8
Bpe04g01108 CCT 1 625 CAMTA Transcription Factor Family AT4G16150 52.6 3.0e-192 669.1
Bpe04g01108 CCT 12 900 CAMTA Transcription Factor Family AT3G16940 53.5 1.4e-257 885.9
Bpe12g00329 . 18 158 CAMTA Transcription Factor Family AT3G16940 54.6 7.5e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21312 PF03859 CG-1 7.40E-40 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01108 Bpe_Chr04 FPKM 0.316759 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0