Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01111 ATGGACAAACGAATCGAGACTAGAAGTGATACAGAGGATGCTGGATGGGAATTATCAACAGGAGAAATCATGAAGATTGCTGGTACAAAGTTCATTCAGTCATTTTCTCGAGCGGGGGATGTGCACTGCATGATCGATCATCCCTTTGATATTTCCTTCTCTTCTCTCTCAGCTGAAGAGATCAAAGATGTAGAACTTGCTGAAATCCTCCTCGCTTCGGCCGAGAAAGTTGGAGCTCAACAATATGAACGAGCAAGCAATTTACTCAAACAGTGTAATTACTTGTCTTCGAATCTTGGGAGTCCTGTCCAAAGAGTTGTTTATTACTTTTCCGAAGCTCTAAGGGAAAAGATTAATCGAGAAACCGGAAGAATCACGAAAGAAAGATTGGGAAATCATCGATCATTCAACATCGATGAAGCTATGATGGGTCCAAATTCCACAGTACTTGCGTATCAAGAAAAAATTCCCTTCGCACAGACTGGACAATTTGCTGGAATCCAGGCAATACTAGAGAAAATTGGGAGCGCAACGAAGATTCACGTGATTGATCTTGCAATAAGAAATGGAATTCAATGGACCGTTCTAATGCAGGCTCTTTCTTCTCGTTCCGAATCTCCAGTCGCACTTCTGAAGATGACAGCAATCGGGACTAATCTTGAGCATTTGATTGAAGATACTGGGAGGAGGTTGGAGAGTTTTGCTCAGACTATGAATTTACCTTTCTGCTTCAAAACAATCATGGTTTCAGACATACTAGATCTTAGAAAAGATCAATTTGACCTAGATTCTGAAGAAACTGTAGCCATCTACGCACAATACTTCCTGAGAAGCATGATACCACGACCTGATCGGTTGGAATCTCTGATGAGAGTGATCAGAAGCATCAAACCCTCTCTAATGGTGATTGCAGAAGTAGAGGCGAACCATAACTCGCCATTTTTTGTGAAGCGATTTGTGGAAGCTCTTTTCTTCTTCAGTGCACACTTTGATTGCCTTGAAACCTTCACAAAACGTGACGATCCAAACAGAATAATAGCAGAATCATTATTCTTCGGCGAGGGAATCAGGAACATGGTAGCAACGGAGGGAGATGAACGAACGAACCGAAACGTGACCATGGATGTTTGGAGGGCATTTTTCAATGGGTTTGGAATGGCGGAGATGGAATTGAGCTCCTCCTCCCTGTACCAGGCAAGGCTAGTAATTCAGAGATTTGGCTGCAGCAGCTCTTGCACGCTGAGAATGAATGGACAAAGCTTGATCATTGGGTGGAAGGGTACGCCAATGCATTCACTGTCAGCCTGGAAGTTTGTCTGA 1320 43.11 MDKRIETRSDTEDAGWELSTGEIMKIAGTKFIQSFSRAGDVHCMIDHPFDISFSSLSAEEIKDVELAEILLASAEKVGAQQYERASNLLKQCNYLSSNLGSPVQRVVYYFSEALREKINRETGRITKERLGNHRSFNIDEAMMGPNSTVLAYQEKIPFAQTGQFAGIQAILEKIGSATKIHVIDLAIRNGIQWTVLMQALSSRSESPVALLKMTAIGTNLEHLIEDTGRRLESFAQTMNLPFCFKTIMVSDILDLRKDQFDLDSEETVAIYAQYFLRSMIPRPDRLESLMRVIRSIKPSLMVIAEVEANHNSPFFVKRFVEALFFFSAHFDCLETFTKRDDPNRIIAESLFFGEGIRNMVATEGDERTNRNVTMDVWRAFFNGFGMAEMELSSSSLYQARLVIQRFGCSSSCTLRMNGQSLIIGWKGTPMHSLSAWKFV 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9003993 9005312 - Bpe015788.3 Bpe04g01111 102920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01111 439 Pfam GRAS domain family 67 437 IPR005202 -
Bpe04g01111 439 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 437 IPR005202 -
Bpe04g01111 439 ProSiteProfiles GRAS family profile. 57 437 IPR005202 -
Bpe04g01111 439 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 2 437 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01111 - - - pvy:116122852 558.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01111 Bpe-Chr4:9003993 Bpe06g00584 Bpe-Chr6:16733681 5.14E-149 dispersed
Bpe04g01111 Bpe-Chr4:9003993 Bpe14g00078 Bpe-Chr14:1265882 1.02E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g81 . Blo12g00085 Bda03g01173 . Bpe04g01111 . Bma04g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018085 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21313 PF03514 GRAS 9.80E-88 CL0063 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01111 Bpe_Chr04 FPKM 1.443888 2.269572 4.640584 4.270124 10.763839 10.756178 10.638065 6.831695 7.924508 6.740979