Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01112 ATGGCCGAGGAAAAGTATAATCGCAGAAACCCCGCGGTGAAGAGGATTCTACATGAGGGAAATATATTTGAATGGAAATTCGCTGTCAGAGGGCTTGCTGATACTGAATTTGAAGATAGAATTTATCATGGGCGGATTCAACTTCCATCAGAATATCCATTAAAGCCTCTCTTCATTTATGTTGCTAACTCCAAATGGTCGTTTCGAAATCCAAACCAAAATTTGATTAACCATATCAAATTATCATCCCGAACACTGGCAACCGTCATGGAGTGTCCACAAGGATGCGGGGCGTTGGGTTCATTAGACTACAAGGCCGAAGAGAGGCGTGCTCTGGCTGTCAAATCTCGTTTAGTGCCCCCAACATTTGGAACACCTGAACGTCAAAAGCTCATTAACGAGATTCATGAATATATGCTGAGCAAGGCAGAAAGCAAGGTACCTCCTGTTCCTAAACAAACTCTTTCTTAG 471 42.89 MAEEKYNRRNPAVKRILHEGNIFEWKFAVRGLADTEFEDRIYHGRIQLPSEYPLKPLFIYVANSKWSFRNPNQNLINHIKLSSRTLATVMECPQGCGALGSLDYKAEERRALAVKSRLVPPTFGTPERQKLINEIHEYMLSKAESKVPPVPKQTLS 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9006854 9008674 + Bpe015789.2 Bpe04g01112 102921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01112 156 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 96 134 - -
Bpe04g01112 156 Pfam Ubiquitin-conjugating enzyme 9 62 IPR000608 -
Bpe04g01112 156 Gene3D Ubiquitin Conjugating Enzyme 3 146 IPR016135 -
Bpe04g01112 156 SUPERFAMILY UBC-like 12 70 IPR016135 -
Bpe04g01112 156 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 156 IPR000608 -
Bpe04g01112 156 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 32 19 57 - -
Bpe04g01112 156 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 19 57 - -
Bpe04g01112 156 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 32 96 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01112 K10578 UBE2J1, NCUBE1, UBC6; ubiquitin-conjugating enzyme E2 J1 [EC:2.3.2.23] - psom:113334403 154.451
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g01112 Bpe05g00811 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01112 Bpe-Chr4:9006854 Bpe05g00811 Bpe-Chr5:21428564 6.69E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g80 Blo01g00047 . . Bda08g00317 Bpe04g01112 . Bma04g01131 Bma05g01013 . . Cma06g01560 Cma14g01593 Car06g01324 Car14g01406 Sed02g1139 Cpe08g00154 Cpe03g01332 Bhi01g01083 Tan10g1070 Cmetu06g1418 . Hepe05g1389 . Lcy11g1344 . . . . . . . . . Cone7ag0104 Cone4ag0107 Lsi05g01587 . . Cme06g00782 . . . . Bpe05g00811 . . . . Cmo06g01557 Cmo14g01624 . . . . . . . . . . . . . Cla05g00700 Cam05g0766 Cec05g0775 Cco05g0768 Clacu05g0756 Cmu05g0722 Cre05g0796 . Csa03g01512 Chy06g00749 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006687 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01112 Bpe_Chr04 FPKM 124.415329 128.266037 245.629166 241.682083 34.967518 40.453415 35.409012 346.017975 337.89389 313.079224