Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01116 ATGGATACTCAATCAGCTGAGGAGCTTCTAAGGAAGATCCAAGAGCTTGAAGCGAGTCACGCTAAGCTAAAGGAAGAGATGTCGAAGCTCATGCTAGCTGGAGGTACTCCAGATTCGAAAACCAATCGGCAAAGTCACCAGTCTTATCGGTCCCACTCGGTATCGCCGCAGCGGTCAAGGTTAGCACCAAGCAGGAGGAGAGGTGGCGGTTTAGACAATTCAACTGTTGGGGCGGCGTGGAAGCAAGGCTCTGCTTCGTTTAGGCATTCGTCTCCGCTTCAGAGGGAGAGCCGAAGTCACGATCCTCTGCTTGTTGGAGGAGGAGGAAGAAATGGAGGTAGAGGTCCTTCGTCTGGGAATTTCCCTGATAGCCAGTACCTGAATATTTTGCAATCCATTGGGCAATCTGTTCATATATTTGATCTAAATGGTCGAATAATCTACTGGAATCGAACTGCTGAAAATACATATGGCTATTCTGCCGCAGAAGCTCTTGGCCGTGATGTAATTGAGATTCTGGCTGATCCCCAAGATTATCAGTTGGCAAATGATATTGTCCGACGCGTTGCTTTAGGGCAGAGTTGGACTGGTCAATTTCCGGTAAAAAACAAGATGAGCGACAGATTTTTAGTCGTTGCGACCAATACTCCATTCTATGATGACAATAATGACTTGATTGGGATTATTTGTGTATCAAGCAATTCACAGCCATTTGATGATGTGCGAATTGGGTTACTGAGTCCAAAACATTCAGAACTAGATTTAAGCAACAACCGACCTAGAAGTATTATCACATCAAAACTTGGCCTTGATCCTCAACAGCCTTTGCAAGTTGCAATTGCATCAAAAATATCGAACTTGGCATCCAAGGTAAGCAACAAAGTGNAGTCAAAGATTATGACAGGAGAAAATAGCTCCGATCGTGAAGGTGGAAGCGGAGATAGTCATCACTCTGATCATGTTTATGTAGATGTCGTTCTCCCTGATAATAGGGAGGATGCAAACTCAAGTGGAGCTAGCACGCCTCGTGGAGATTTAAACCCCACTACTACTTTCGGTGTGTTTTCATCAATGGAGGAGAAGTACTATGGAAACTCCTCTCGAGAGTCTGCTGATGGTGGCGAAGAAAAGCCTGCAATCCACAAGATAATTACCTCGAGGGCAGAGGCATGGATTAGTAAGAAAGGCATATCGTGGCCGTGGAAAGGAAACGAACGAGAAGGATCAGAGGCAAGGACTACCCGTTTTGGTTGGCCCTGGCTGCAAAATGATCTAGAGGCAGAATTACACAATCACAAGAATTCCTCATCGAGCTCGAAACAAGACAACCAGGCTCATGAAAGTAATCGGCCGGTCAATAATGACGCCTCGGGATCGTGGTCATCATTCAATGTTAACAGTACAAGCAGCGCAAGCAGCTGTGGTAGTAGCAATAGTAGTGCGGTTAATAAAGTTGATATGGACATAGACTGCTTGGATTATGAAATCTTGTGGGAGGACTTGACTATTGGAGAGCAAATTGGACAAGGTTCTTGTGGGACTGTATATCGTGCCCTGTGGTATGGATCAGATGTTGCTGTCAAAGTATTTTCCAGGCAAGAATATTCAGAAGATGTGATACTTTCATTTAGACAGGAGGTATCCCTAATGAAGAAGCTTCGACATCCCAATATTCTTCTCTTTATGGGTGTCGTGACCTCACCTCAACGTCTTTGCATTGTGACTGAGTTCCTTCTGCGCGGGAGTCTATTTCATTTACTTCAGAAGAACACTGCAAAACTAGATTGGAGACGGCGGGTTCATATGGCATTGGATATAGCACGGGGCATAAATTATCTCCATCACTGCAATCCGCCCGTTATTCACCGTGATTTGAAATCATCAAATCTTCTCATCGATAAAAACTGGACTGTGAAGGTTGGCGATTTTGGTTTGTCCCGTCTCAAATACGACACTTATCTGTCAACTAAGACAGGAAAGGGAACGCCACAATGGATGGCTCCAGAAGTACTACGGAGTGAACCATCAGATGAAAAGTCTGACATATACAGCTTTGGAGTCGTCTTGTGGGAGCTTGCCACTGAAAAGATCCCTTGGGATAACCTCAATTCCATGCAGGTTATTGGTGCCGTGGGTTTCATGAACCAGCGGCTGGAAATCCCAAAAGACGTCGATCCACAGTGGGCTTCCATGATTGAGAGTTGTTGTCACAGTGATCCTCATAGCCGGCCGACGATCCTGGAACTAATGGGAAAGCTTAGGGAGCTTCAAAGAAAATATGCAATTCAATTTCAGGCAGCTCGTTCTGGTGTCAGAGCTAATGCTCCAAAGGAATTATAG 2340 45.13 MDTQSAEELLRKIQELEASHAKLKEEMSKLMLAGGTPDSKTNRQSHQSYRSHSVSPQRSRLAPSRRRGGGLDNSTVGAAWKQGSASFRHSSPLQRESRSHDPLLVGGGGRNGGRGPSSGNFPDSQYLNILQSIGQSVHIFDLNGRIIYWNRTAENTYGYSAAEALGRDVIEILADPQDYQLANDIVRRVALGQSWTGQFPVKNKMSDRFLVVATNTPFYDDNNDLIGIICVSSNSQPFDDVRIGLLSPKHSELDLSNNRPRSIITSKLGLDPQQPLQVAIASKISNLASKVSNKVXSKIMTGENSSDREGGSGDSHHSDHVYVDVVLPDNREDANSSGASTPRGDLNPTTTFGVFSSMEEKYYGNSSRESADGGEEKPAIHKIITSRAEAWISKKGISWPWKGNEREGSEARTTRFGWPWLQNDLEAELHNHKNSSSSSKQDNQAHESNRPVNNDASGSWSSFNVNSTSSASSCGSSNSSAVNKVDMDIDCLDYEILWEDLTIGEQIGQGSCGTVYRALWYGSDVAVKVFSRQEYSEDVILSFRQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLLRGSLFHLLQKNTAKLDWRRRVHMALDIARGINYLHHCNPPVIHRDLKSSNLLIDKNWTVKVGDFGLSRLKYDTYLSTKTGKGTPQWMAPEVLRSEPSDEKSDIYSFGVVLWELATEKIPWDNLNSMQVIGAVGFMNQRLEIPKDVDPQWASMIESCCHSDPHSRPTILELMGKLRELQRKYAIQFQAARSGVRANAPKEL 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9134316 9139461 + Bpe015793.1 Bpe04g01116 102925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01116 779 Gene3D PAS domain 134 236 - -
Bpe04g01116 779 CDD STKc_MAP3K-like 507 753 - -
Bpe04g01116 779 MobiDBLite consensus disorder prediction 309 327 - -
Bpe04g01116 779 SUPERFAMILY PYP-like sensor domain (PAS domain) 128 231 IPR035965 -
Bpe04g01116 779 MobiDBLite consensus disorder prediction 298 352 - -
Bpe04g01116 779 MobiDBLite consensus disorder prediction 333 352 - -
Bpe04g01116 779 CDD PAS 133 231 IPR000014 -
Bpe04g01116 779 MobiDBLite consensus disorder prediction 427 461 - -
Bpe04g01116 779 MobiDBLite consensus disorder prediction 27 121 - -
Bpe04g01116 779 MobiDBLite consensus disorder prediction 35 60 - -
Bpe04g01116 779 Gene3D Phosphorylase Kinase; domain 1 494 578 - -
Bpe04g01116 779 SMART pas_2 124 191 IPR000014 -
Bpe04g01116 779 Pfam PAS fold 125 231 IPR013767 GO:0006355
Bpe04g01116 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Bpe04g01116 779 Gene3D Transferase(Phosphotransferase) domain 1 580 766 - -
Bpe04g01116 779 ProSiteProfiles PAS repeat profile. 122 193 IPR000014 -
Bpe04g01116 779 MobiDBLite consensus disorder prediction 77 92 - -
Bpe04g01116 779 MobiDBLite consensus disorder prediction 436 461 - -
Bpe04g01116 779 SMART serkin_6 501 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g01116 779 ProSiteProfiles Protein kinase domain profile. 501 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g01116 779 SUPERFAMILY Protein kinase-like (PK-like) 484 751 IPR011009 -
Bpe04g01116 779 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 35 777 - -
Bpe04g01116 779 Coils Coil 6 33 - -
Bpe04g01116 779 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 35 777 - -
Bpe04g01116 779 Pfam Protein tyrosine and serine/threonine kinase 501 753 IPR001245 GO:0004672|GO:0006468
Bpe04g01116 779 TIGRFAM sensory_box: PAS domain S-box protein 125 231 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01116 Bpe-Chr4:9134316 Bpe08g01480 Bpe-Chr8:15522659 1.72E-23 dispersed
Bpe14g01297 Bpe-Chr14:9906783 Bpe04g01116 Bpe-Chr4:9134316 9.10E-54 dispersed
Bpe04g01116 Bpe-Chr4:9134316 Bpe13g00378 Bpe-Chr13:11520049 2.00E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63310 PF07714 PK_Tyr_Ser-Thr 1.30E-64 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01116 - - pop:7471103 1076.62