Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01123 ATGACTCACCATGAGAACCGCCGTAGCCCTGGTGATTTCAGAGTCGGAAGTAACGGTGGTTACCACCGTTTTTACGACAGTCCACCCGGTCATTCTCCTGGAAGTGGCAGTGGATTCTGGCCAATGGGTGGGGGAGGTGGTGGTGGATTCCGCCCGATTGGTGGCGATGCTAGAGGATATGGGTCTAATCACCAGCCATCGCCTATGGTGGGACATAAACGAGGATATCCGTTCATGGGTCGGGGAGGATCTCCTGATAATTTTGATAATAATTTCGCGAAGCTTTTTGTTGGATCTGTTCCGAGGACGGCCACAGAAGAAGATATTCGACCGTTGTTTGAAAAGCATGGAAATGTGATAGAGGTAGCTTTGATTAAAGATAAGAGGACGGGGCAGCAACAAGCCTTCATTAATGCAGGATGTTGTTTTATAAAATATGCAACATCAGAGGAAGCTGATAGGGCAATTCGGGCTTTGCACAATCAACATACGCTTCCTGGAAGTATGGGACCCATTCAAGTTCGGTATGCAGATGGAGAACGGGAGAGACTGGGTAGTGCGGTTGAATTCAAATTGTTCGTTGGCTCGCTGAACAAACAAGCTACAGAAAAGGAAGTTGAGGAAATATTTTCTCCATTTGGCCGAGTGGAAGATGTTTATATTATGCGTGATGAATTCAAGCAAAGTCGTGGATGTGGATTCGTTAAGTATGGGAATAGAGATATGGCACTGATGGCTATAAAGGGTCTTCATGGAATCTATATGATGAGGGGTTGTGATCAACCATTAACTGTTCGATTTGCTGATCCTAAGAGGCCTAGATCTGGAGATTCAAGGTTTTTTCCTCTTAAACATGACTCTCACGTTTTGATTGTCAAGATTCTTTCTCTTTCCATGTCATTATCGTTCTTTTCTGAGGTGGATTCCATTCAATATAAATTCTATTCACCATCGATTGACGATGACATTCGTGGCTTTAAGGATCAGTTGCCTCCAAGGTCTAGTGACATGGCACTTCCTTTGAATTTGGGTGGTCCTGGAGGTTCCCTTCAGGGGTCGATAAATTCATCTTCTTCGACACCAAAGCAGTCCCCAGTACAAGCTCCTCCAGTTGGGCAGCAAGTATCATCATTGCAGAAGCCTTTTCAGTCATCACCCCAATTCCCACCTTCTGCTCAATTACAACGTCAATCGCAGGCATCCCTTTCATCAGTTCGGCCTCTTGGTGTGCAACAGTATCCTCCTTCTTCCGGTCAAATCTCATACAGCCAAGCTTCAACTACCCAACAGCCTATTGGTGTAGTCAGTGGGCAGTCAGGTTCTCAGACTTTGGTCCCACAGCAGGCCTCACTCGTTACAGGGTTGCAAACACAACCTCATACTGCATCAACTCCCATCAATCAACAGCAGCATCCAGCACCTGTTCATCAATCTCCTTCTCATTTGGCTCAGATGCTGTCACAACAAACACAAACTTTGCAGGCCAGCTTTCAGTCTTCACAGCAAGCATTCTCCCAGTTGCAACAGCAGTTGCAGCAGATGCAACCTTCGAATCAAGGCTTATCTCCACGGCAAAATTCCCAGGCTTCTAAAGTGCAGTGGACTGGAAATGTGCCGCATGCAGCTGGTGGTGGCACTCCTGCTGCAAATGTATCTTCATCCACGCCTGGTGCGTTTGCTGTTTCTTCAACTGCTCAGGCTGTAGCTCCAGCAAAATCTAATTGGACAGAACACACCTCTCCTGATGGTTACAAGTACTATTATAATGGCGTGACTGGTGAAAGTAGGTGGGAGAAACCTGAAGAGCTTACTTTACTTGAGCAGCAGCAACAAAAGCAGTCAGTTCAGCCGTCTCAAACCCAGTCCTTTCCACCGTCCTCAACTTCTCTATGGCTCCCTCAAAACCAACAGATACAGTTTCAAGTTCCTCAACAATCCCATATCCGAAGTCATCAGCAGTTGCACCTACAGCAGCCTTCTATATCATCATCAGTTTGTGCCCTTTACATCTTTCTCTCTTTTTATGTGTTTTGGACTGTCAACTATAACTATTATAATTTCTCACTTTATAAATTTGATATTTCAGTACCAAGTTTCTGGAGTTGCGAGTCTCCAAAATATTCAGGTATTTGA 2133 45.34 MTHHENRRSPGDFRVGSNGGYHRFYDSPPGHSPGSGSGFWPMGGGGGGGFRPIGGDARGYGSNHQPSPMVGHKRGYPFMGRGGSPDNFDNNFAKLFVGSVPRTATEEDIRPLFEKHGNVIEVALIKDKRTGQQQAFINAGCCFIKYATSEEADRAIRALHNQHTLPGSMGPIQVRYADGERERLGSAVEFKLFVGSLNKQATEKEVEEIFSPFGRVEDVYIMRDEFKQSRGCGFVKYGNRDMALMAIKGLHGIYMMRGCDQPLTVRFADPKRPRSGDSRFFPLKHDSHVLIVKILSLSMSLSFFSEVDSIQYKFYSPSIDDDIRGFKDQLPPRSSDMALPLNLGGPGGSLQGSINSSSSTPKQSPVQAPPVGQQVSSLQKPFQSSPQFPPSAQLQRQSQASLSSVRPLGVQQYPPSSGQISYSQASTTQQPIGVVSGQSGSQTLVPQQASLVTGLQTQPHTASTPINQQQHPAPVHQSPSHLAQMLSQQTQTLQASFQSSQQAFSQLQQQLQQMQPSNQGLSPRQNSQASKVQWTGNVPHAAGGGTPAANVSSSTPGAFAVSSTAQAVAPAKSNWTEHTSPDGYKYYYNGVTGESRWEKPEELTLLEQQQQKQSVQPSQTQSFPPSSTSLWLPQNQQIQFQVPQQSHIRSHQQLHLQQPSISSSVCALYIFLSFYVFWTVNYNYYNFSLYKFDISVPSFWSCESPKYSGI 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9640879 9654081 - Bpe015803.2 Bpe04g01123 102932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01123 710 ProSitePatterns WW/rsp5/WWP domain signature. 575 600 IPR001202 GO:0005515
Bpe04g01123 710 Pfam WW domain 573 600 IPR001202 GO:0005515
Bpe04g01123 710 PANTHER TRANSFORMER-2-RELATED 61 671 - -
Bpe04g01123 710 CDD RRM2_FCA 191 270 IPR034645 -
Bpe04g01123 710 SMART ww_5 570 602 IPR001202 GO:0005515
Bpe04g01123 710 ProSiteProfiles WW/rsp5/WWP domain profile. 569 602 IPR001202 GO:0005515
Bpe04g01123 710 SUPERFAMILY WW domain 574 607 IPR036020 GO:0005515
Bpe04g01123 710 Gene3D - 85 187 IPR012677 -
Bpe04g01123 710 SUPERFAMILY RNA-binding domain, RBD 55 177 IPR035979 GO:0003676
Bpe04g01123 710 MobiDBLite consensus disorder prediction 508 535 - -
Bpe04g01123 710 MobiDBLite consensus disorder prediction 348 425 - -
Bpe04g01123 710 Gene3D - 188 276 IPR012677 -
Bpe04g01123 710 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 61 671 - -
Bpe04g01123 710 MobiDBLite consensus disorder prediction 1 69 - -
Bpe04g01123 710 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 179 IPR000504 GO:0003723
Bpe04g01123 710 PRINTS Paraneoplastic encephalomyelitis antigen family signature 195 210 IPR002343 GO:0003723|GO:1990904
Bpe04g01123 710 PRINTS Paraneoplastic encephalomyelitis antigen family signature 251 268 IPR002343 GO:0003723|GO:1990904
Bpe04g01123 710 PRINTS Paraneoplastic encephalomyelitis antigen family signature 93 108 IPR002343 GO:0003723|GO:1990904
Bpe04g01123 710 PRINTS Paraneoplastic encephalomyelitis antigen family signature 210 222 IPR002343 GO:0003723|GO:1990904
Bpe04g01123 710 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 270 IPR000504 GO:0003723
Bpe04g01123 710 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 256 IPR000504 GO:0003723
Bpe04g01123 710 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 164 IPR000504 GO:0003723
Bpe04g01123 710 CDD WW 572 602 IPR001202 GO:0005515
Bpe04g01123 710 SUPERFAMILY RNA-binding domain, RBD 190 278 IPR035979 GO:0003676
Bpe04g01123 710 Gene3D - 569 619 - -
Bpe04g01123 710 MobiDBLite consensus disorder prediction 508 556 - -
Bpe04g01123 710 SMART rrm1_1 191 266 IPR000504 GO:0003723
Bpe04g01123 710 SMART rrm1_1 94 175 IPR000504 GO:0003723
Bpe04g01123 710 MobiDBLite consensus disorder prediction 325 425 - -
Bpe04g01123 710 MobiDBLite consensus disorder prediction 454 489 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01123 - - - zju:107407407 564.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00442 Bpe-Chr3:23405424 Bpe04g01123 Bpe-Chr4:9640879 1.51E-42 dispersed
Bpe04g01123 Bpe-Chr4:9640879 Bpe06g00493 Bpe-Chr6:16179936 2.35E-11 dispersed
Bpe04g01123 Bpe-Chr4:9640879 Bpe03g00494 Bpe-Chr3:24699016 1.81E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g01123 Bpe_Chr04 FPKM 9.090186 7.100417 25.039875 24.825743 5.034849 6.496891 4.732677 28.769106 33.487011 31.015188